Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_L22
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0282 + 42462685-42462807,42463267-42463617,42464110-424641... 36 0.040
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 31 1.1
11_06_0175 + 20926022-20926145,20926285-20926640,20926930-209276... 31 1.5
04_04_0973 + 29825057-29825344,29825447-29825552,29825750-298258... 31 1.5
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 29 3.5
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 29 4.6
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 29 4.6
08_01_0792 - 7682404-7682568,7682676-7682706,7684836-7685032 29 6.1
04_03_0188 + 12439714-12439910,12442044-12442074,12442182-12442346 29 6.1
>01_07_0282 +
42462685-42462807,42463267-42463617,42464110-42464136,
42464359-42464409,42465514-42465666,42465927-42465941
Length = 239
Score = 35.9 bits (79), Expect = 0.040
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +1
Query: 376 PRRAVSSCSNRRSHPGRHSRRTIHYSLRGGSVSRSGTADHGSPTLYTPCRSQLPHSSGRP 555
PR ++ ++ HP R H+ + GG+ S S A HG P L P + + + P
Sbjct: 30 PRARAAAAADSSWHPNHPPTRRGHH-VGGGNASPSAAAGHGLPPLSAPAPAPIAGADDLP 88
Query: 556 CLWRTRESTPWDGSMPI 606
R + P P+
Sbjct: 89 AFGRAPKQAPPHFGFPL 105
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 431 ECRPGWDRLLEHEETARRGECRSDRSGSREAALH 330
ECR G+ R+L+ EE D GSREA LH
Sbjct: 969 ECRDGYWRVLDTEEAFDSLVASLDTRGSREAQLH 1002
>11_06_0175 +
20926022-20926145,20926285-20926640,20926930-20927671,
20928012-20928031
Length = 413
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 349 DPERSERHSPRRAVSSCSNRRSHPGRHSRRTI 444
D ER R +PRR++ S + RRS +RR+I
Sbjct: 219 DEERVSRETPRRSIDSAAARRSIDSAAARRSI 250
>04_04_0973 +
29825057-29825344,29825447-29825552,29825750-29825845,
29826335-29826690,29826980-29827721,29828064-29828083
Length = 535
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 349 DPERSERHSPRRAVSSCSNRRSHPGRHSRRTI 444
D ER R +PRR++ S + RRS +RR+I
Sbjct: 341 DEERVSRETPRRSIDSAAARRSIDSAAARRSI 372
>06_03_1072 +
27365834-27365945,27366360-27366464,27366844-27366929,
27367445-27367631,27368031-27368142,27368235-27368337,
27368424-27368469,27368670-27368708,27368803-27368959,
27369031-27369133,27369337-27369453,27369880-27369957,
27370044-27370145,27370252-27370345,27370432-27370542,
27370643-27370707,27370949-27371097,27371349-27371581,
27371778-27371908,27372016-27372126,27372210-27372326
Length = 785
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -1
Query: 667 NVISWKDGLFSIALSDVGGKRLAYYHPMVSTHEYAIDTAVLKNGGADFDKEYKVLGSRGP 488
N ++ D A+SD+ K + Y P+ S +++ + L GG +D+E+ + GS G
Sbjct: 475 NSLNLIDNSSQKAVSDIHLKSIIIY-PVKSCQGFSVKSWPLTTGGLMYDREWLLQGSGGE 533
Query: 487 L 485
+
Sbjct: 534 I 534
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 460 GGSVSRSGTADHGSPTLYTPCRSQLPHSS 546
GG ++ G D SP L TP R +LP +S
Sbjct: 344 GGGGNKKGRRDSPSPPLETPPRGELPSTS 372
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 349 DPERSERHSPRRAVSSCSNRRSHPGRHSRRTI 444
D ER R +PRR+V S + RRS RR I
Sbjct: 205 DEERVSRETPRRSVDSSAPRRSIDSAAPRRII 236
>08_01_0792 - 7682404-7682568,7682676-7682706,7684836-7685032
Length = 130
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 292 TRKAHSALSLNR*CKAASLDPERSERHSPRRAVSSCSNRRSHPGRHSR 435
TR+ ++ +++R A + E H+P + SS S+R P RH++
Sbjct: 64 TRRKYNMRNIDREISAGGYEAEAD--HTPEKMTSSVSSRAEAPVRHNK 109
>04_03_0188 + 12439714-12439910,12442044-12442074,12442182-12442346
Length = 130
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 292 TRKAHSALSLNR*CKAASLDPERSERHSPRRAVSSCSNRRSHPGRHSR 435
TR+ ++ +++R A + E H+P + SS S+R P RH++
Sbjct: 64 TRRKYNMRNIDREISAGGYEAEAD--HTPEKMTSSVSSRAEAPVRHNK 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,699,922
Number of Sequences: 37544
Number of extensions: 501361
Number of successful extensions: 1538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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