Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L22
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U28409-5|AAC46591.1|  246|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   9.5  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 638 EQTIFPANDVARYGEVQSFLAMNEARVVDPPESSGSQREDNQAIXRQVRYVGVRLATSSR 817
           E   F  ++V    +++  L M    + D  + S  +RED+QA  R V+  G +L +SS 
Sbjct: 661 ETAFFVIDNVLTSAQIRPILEMMNMALDDFLKVSEKEREDDQA--RFVQLDGAKLFSSSH 718

Query: 818 LHV 826
            H+
Sbjct: 719 AHL 721


>U28409-5|AAC46591.1|  246|Caenorhabditis elegans Hypothetical
           protein T25D10.4 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 346 LDPERSERHSPRRAVSSCSNRRSHPGRHSRRTIHYSLRGGSVSRSGTADHG-SPTLYTPC 522
           + P  S R  PRR +   S+       ++ RT+H +      S SG+  H  S ++Y   
Sbjct: 149 IPPRSSNRFGPRRVIRRPSDILPRQQTNNIRTLHVNSDDSDSSSSGSKTHSPSSSVYNAS 208

Query: 523 RSQLP 537
              LP
Sbjct: 209 TLILP 213


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = +1

Query: 289 PTRKAHSAL-SLNR*CKAASLDPERSERHSPRRAVSSCSNRRSHPGRHSRRTIHYSLRGG 465
           P RK  S   S NR  +  S D ER    SPR      +  RS     S R  H   R  
Sbjct: 130 PLRKRISPPPSENREKEKQSRDKERRRSRSPRDRRGRATTSRSGRTSSSDRDRHSKRRSR 189

Query: 466 SVSRSGTADHGSP 504
           S SRS +     P
Sbjct: 190 SRSRSSSGSRTPP 202


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +1

Query: 346 LDPERSERHSPRRAVSSCSNRRSHPGRHSRRTIHYSLRGGSVSRSGTADHGS 501
           L  ++SE    R    S   RR H GRH  R+      GG     G   HGS
Sbjct: 215 LKKQKSEGVEHRGRSGSPGGRRGHGGRHGSRS---GSPGGRHGHGGHGGHGS 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,017,875
Number of Sequences: 27780
Number of extensions: 415127
Number of successful extensions: 1100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)