Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L17
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   1.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   2.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   2.0  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    24   7.9  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = -3

Query: 334  PMVIQRWYTEHFAVIQNKIHYVLP*VFHCCT 242
            P++++  +++HF+ ++N  H ++  +  CCT
Sbjct: 1212 PLILK--FSKHFSNLENSFHSLVQKLLSCCT 1240


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 60  GSS*LTLYFHGYARGYRLHGLF 125
           GS+   +YF+   RG+R+H LF
Sbjct: 352 GSNDQQIYFYDTFRGHRIHSLF 373


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 304  HFAVIQNKIHYVLP*VFHCCTGSPVIDDL 218
            H ++  N IHY+L   +H    SPV   L
Sbjct: 1571 HPSLYSNPIHYLLRKAYHTTNASPVATSL 1599


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 154 GNNFPTLLQTFDRNFRISLPTA 219
           G N   LL TF+ ++RI +P A
Sbjct: 297 GWNAQVLLNTFNNSYRIRIPRA 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,732
Number of Sequences: 5004
Number of extensions: 27201
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)