Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L17
         (351 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029575-1|AAH29575.1|  166|Homo sapiens transmembrane protein 3...    31   1.0  
AL049610-10|CAI42164.1|  168|Homo sapiens transmembrane protein ...    31   1.0  
AK075311-1|BAC11540.1|  275|Homo sapiens protein ( Homo sapiens ...    30   2.4  
BC112896-1|AAI12897.1|  298|Homo sapiens GSG1 protein protein.         29   5.5  
BC033854-1|AAH33854.1|  323|Homo sapiens GSG1 protein protein.         29   5.5  
AK075322-1|BAC11548.1|  326|Homo sapiens protein ( Homo sapiens ...    29   5.5  

>BC029575-1|AAH29575.1|  166|Homo sapiens transmembrane protein 31
           protein.
          Length = 166

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 315 GTPNILLLFKIKSTMYFLKYFIVVLVALSLMI 220
           G P IL LF + ST+YF K+F+  +++LS  I
Sbjct: 120 GLPIILHLFAL-STLYFYKFFLPTILSLSFFI 150


>AL049610-10|CAI42164.1|  168|Homo sapiens transmembrane protein 31
           protein.
          Length = 168

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 315 GTPNILLLFKIKSTMYFLKYFIVVLVALSLMI 220
           G P IL LF + ST+YF K+F+  +++LS  I
Sbjct: 120 GLPIILHLFAL-STLYFYKFFLPTILSLSFFI 150


>AK075311-1|BAC11540.1|  275|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90830 fis, clone Y79AA1001793, moderately
           similar to Mus musculus mRNA for GSG1. ).
          Length = 275

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 85  STVTHVAIDFMGCSRCGENFKAFGNNFPTLLQTFDRNFRISLPTANHQ*QGYQYNNEILK 264
           +T T V ++F  C    ++FK   N  P   Q F R    + PT       +QY+N+ + 
Sbjct: 180 NTYTRVVLEFK-CKH-SKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIH 237

Query: 265 EVHSG--FYFE 291
            V  G  FY E
Sbjct: 238 SVSEGVDFYSE 248


>BC112896-1|AAI12897.1|  298|Homo sapiens GSG1 protein protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 85  STVTHVAIDFMGCSRCGENFKAFGNNFPTLLQTFDRNFRISLPTANHQ*QGYQYNNEILK 264
           +T T + ++F  C    ++FK   N  P   Q F R    + PT       +QY+N+ + 
Sbjct: 203 NTYTRMVLEFK-CKH-SKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIH 260

Query: 265 EVHSG--FYFE 291
            V  G  FY E
Sbjct: 261 SVSEGVDFYSE 271


>BC033854-1|AAH33854.1|  323|Homo sapiens GSG1 protein protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 85  STVTHVAIDFMGCSRCGENFKAFGNNFPTLLQTFDRNFRISLPTANHQ*QGYQYNNEILK 264
           +T T + ++F  C    ++FK   N  P   Q F R    + PT       +QY+N+ + 
Sbjct: 228 NTYTRMVLEFK-CKH-SKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIH 285

Query: 265 EVHSG--FYFE 291
            V  G  FY E
Sbjct: 286 SVSEGVDFYSE 296


>AK075322-1|BAC11548.1|  326|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90841 fis, clone Y79AA1002373, highly similar to
           Germ cell associated 1. ).
          Length = 326

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 85  STVTHVAIDFMGCSRCGENFKAFGNNFPTLLQTFDRNFRISLPTANHQ*QGYQYNNEILK 264
           +T T + ++F  C    ++FK   N  P   Q F R    + PT       +QY+N+ + 
Sbjct: 231 NTYTRMVLEFK-CKH-SKSFKENPNCLPHHHQCFPRRLSSAAPTVGPLTSYHQYHNQPIH 288

Query: 265 EVHSG--FYFE 291
            V  G  FY E
Sbjct: 289 SVSEGVDFYSE 299


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,612,501
Number of Sequences: 237096
Number of extensions: 943127
Number of successful extensions: 1745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)