Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L17
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    28   2.2  
Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical pr...    27   5.0  
D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.        27   5.0  
AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride ...    27   5.0  
Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    26   6.6  
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        26   6.6  
AL021567-3|CAA16509.2|  650|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 291 FKIKSTMYFLKYFIVVLVALSLMICSG 211
           F +KS +YF  Y  VVL+ + L++ +G
Sbjct: 187 FHLKSIIYFQVYMTVVLLVIPLVVMAG 213


>Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical
           protein T27D12.2b protein.
          Length = 902

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 273 MYFLKYFIVVLVALSLMICSG 211
           +YFL YFI+V + ++L I SG
Sbjct: 478 IYFLFYFIIVPICITLYIPSG 498


>Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical
           protein T27D12.2a protein.
          Length = 906

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 273 MYFLKYFIVVLVALSLMICSG 211
           +YFL YFI+V + ++L I SG
Sbjct: 478 IYFLFYFIIVPICITLYIPSG 498


>D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.
          Length = 902

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 273 MYFLKYFIVVLVALSLMICSG 211
           +YFL YFI+V + ++L I SG
Sbjct: 478 IYFLFYFIIVPICITLYIPSG 498


>AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 868

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 273 MYFLKYFIVVLVALSLMICSG 211
           +YFL YFI+V + ++L I SG
Sbjct: 440 IYFLFYFIIVPICITLYIPSG 460


>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 113 SWAVPAAVRTLKPLAIIFPPFFRLLTGI 196
           SW +P AV  +    I FP  F  L GI
Sbjct: 107 SWNLPCAVTAVFKYIIAFPIIFHTLNGI 134


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 113 SWAVPAAVRTLKPLAIIFPPFFRLLTGI 196
           SW +P AV  +    I FP  F  L GI
Sbjct: 107 SWNLPCAVTAVFKYIIAFPIIFHTLNGI 134


>AL021567-3|CAA16509.2|  650|Caenorhabditis elegans Hypothetical
           protein F21A10.4 protein.
          Length = 650

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 142 FKAFGN-NFPTLLQTFDRNFRISLPTANHQ 228
           FKA  N +  TLL   + NFR  LP A+ Q
Sbjct: 386 FKAIANLSHETLLSPGEHNFRFQLPFADSQ 415


>Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical
           protein H12D21.10 protein.
          Length = 523

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 133 GENFKAFGNNFPTLLQTFDRN----FRISLPTANHQ*QGYQYNNEILK 264
           G  +KAF  N P  L+ FD+      R+ +P    Q  G  YN+ +++
Sbjct: 267 GVTWKAFSKNQPFELKEFDQKKVCFKRVMMPLLARQRTGLFYNSPVVE 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,008,007
Number of Sequences: 27780
Number of extensions: 151379
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)