Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L16
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6NHX7 Cluster: Putative ABC transport system, ATP-bind...    34   3.1  
UniRef50_Q23060 Cluster: Serpentine receptor, class m protein 1;...    33   5.4  
UniRef50_A4VDE7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q5UP66 Cluster: Putative ankyrin repeat protein R597; n...    33   7.1  
UniRef50_A2G867 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  
UniRef50_A0C8A3 Cluster: Chromosome undetermined scaffold_157, w...    33   9.4  

>UniRef50_Q6NHX7 Cluster: Putative ABC transport system, ATP-binding
            protein; n=1; Corynebacterium diphtheriae|Rep: Putative
            ABC transport system, ATP-binding protein -
            Corynebacterium diphtheriae
          Length = 1246

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 387  NGGTEFVFHNIKFSVSHDQPAVKD 316
            N GT+  FHN+ FS SHD  AV D
Sbjct: 999  NEGTDITFHNVGFSYSHDSAAVID 1022


>UniRef50_Q23060 Cluster: Serpentine receptor, class m protein 1;
           n=2; Caenorhabditis|Rep: Serpentine receptor, class m
           protein 1 - Caenorhabditis elegans
          Length = 331

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +2

Query: 98  STNKLKQQLKVSLIIQLHYALPCSTEHMLFYLPMFIYYLFTVQ 226
           STN +K Q ++++++ + + LP  T H+ FY+  F+  LF ++
Sbjct: 236 STNSMKSQQQLNMVLMVQFILPFLTIHIPFYV-SFLMPLFRIE 277


>UniRef50_A4VDE7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 181

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 505 YFNDRSLNYFEIFALVHRSSDLV*KLYNYYCHFREY 398
           YFND  LNYF +   V          Y+YYC++ EY
Sbjct: 91  YFNDYHLNYFNLLYFVKYYYYHDYDYYDYYCYYYEY 126


>UniRef50_Q5UP66 Cluster: Putative ankyrin repeat protein R597; n=1;
           Acanthamoeba polyphaga mimivirus|Rep: Putative ankyrin
           repeat protein R597 - Mimivirus
          Length = 274

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 294 LKILSRFSFENQFIFNNFIVLYYCTVN 214
           LKI+SR+ FEN++I+NN  ++ Y   N
Sbjct: 142 LKIISRYHFENKYIYNNHEIVKYMIDN 168


>UniRef50_A2G867 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 181

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 128 VSLIIQLHYALPCS----TEHMLFYLPMFIYYLFTVQ*YKTMKLLKINWFSNENLLNIFR 295
           +++II +++ + C     T H+ F     IY +FT      +   K  WFSN N  N++ 
Sbjct: 40  LTIIINMYFFISCCGHFFTTHIFFLASTIIYVVFTASTKNVINAHKSVWFSN-NQGNVYY 98

Query: 296 SLD 304
            +D
Sbjct: 99  QID 101


>UniRef50_A0C8A3 Cluster: Chromosome undetermined scaffold_157,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_157,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 331

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 399 ISGSNGGTEFVFHNIKFSVSHDQPAVKDK--PE--SSRLLKILSRFSFENQFI-FNNFIV 235
           I G N G +   +NI+      +P +K    PE  +     +LS FSF+NQF+ FNN  +
Sbjct: 261 IFGLNKGRKQTHYNIRRVHQSIKPQIKTNFMPELPNFNFSNVLSYFSFQNQFVDFNNENI 320

Query: 234 LYYCTV 217
           + Y  +
Sbjct: 321 MAYSNI 326


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,710,714
Number of Sequences: 1657284
Number of extensions: 12172805
Number of successful extensions: 24765
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24756
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)