Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L16
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    28   1.5  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    25   8.2  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.2  

>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 127 F*LLFQLVCREAEALILIFD*TIFYIQYYIVILKYFDLPYL 5
           F LLF  + R  +  +++F  +   ++Y   +L Y DLP L
Sbjct: 324 FLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVL 364


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 445 DLV*KLYNYYCHFREYFRFKW 383
           D++ ++YN   HF+E  +F W
Sbjct: 189 DIIHEIYNVGSHFKEVTKFLW 209


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 22  NILKLLYSIVYKKLFNQILKLKPRPLDKQVETTIKSIVNYSTPLRAPVFNG 174
           ++  +L++ V K   +  L   P  + + VE   KS   Y T     +FNG
Sbjct: 2   SLTSVLWNFVAKLAVDHGLNTNPDQVFQTVENVGKSFEKYETSFLKSLFNG 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,977
Number of Sequences: 5004
Number of extensions: 56894
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)