Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L16
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine rece...    33   0.16 
Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine rec...    28   7.7  

>U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine
           receptor, class m protein1 protein.
          Length = 331

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +2

Query: 98  STNKLKQQLKVSLIIQLHYALPCSTEHMLFYLPMFIYYLFTVQ 226
           STN +K Q ++++++ + + LP  T H+ FY+  F+  LF ++
Sbjct: 236 STNSMKSQQQLNMVLMVQFILPFLTIHIPFYV-SFLMPLFRIE 277


>Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical
           protein T23D5.6 protein.
          Length = 337

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 212 LFTVQ*YKTMKLLKINWFSNENLLNIFRSLDDS 310
           ++ +  Y+     ++NWF N  +L IFR  D+S
Sbjct: 304 MYVITDYRRAFQCELNWFENSKILKIFRCCDES 336


>Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical
           protein R05D11.6 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 112 ETTIKSIVNYSTPLRAPVFNGTHAVLFTNVYLLFIYCTIIQNNEIIE 252
           E   KS+      +++ V NG H V     YL  +  ++IQN + +E
Sbjct: 224 ECYAKSVTRRLAKIKSAVSNGAHTVKGLTTYLDAVNMSMIQNTQKLE 270


>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 315 KPESSRLLKILSRFSFENQFIFNNFIVLYY 226
           KP+ S L+    RF+FE  F    F+V YY
Sbjct: 76  KPKFSSLMTTTRRFTFEQLFSGKQFLVDYY 105


>U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 9 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 446 RFGLKVVQLLLPL*RIFQVQMVARNLYFTILN 351
           RF + V QL +P  + FQ   +  N+Y+ +LN
Sbjct: 86  RFFVYVPQLCIPASKFFQSHSLLMNIYYPLLN 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,063
Number of Sequences: 27780
Number of extensions: 308114
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)