Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L10
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.51 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.6  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.8  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   6.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   8.4  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 658 KELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTK 503
           K L +   +S ++ LSQ K  ++ +TTS     D +S+  +   D+++ L K
Sbjct: 689 KLLLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNK 740


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 616 LSQTKKSIDDITTSARRSMDDISSKAKS 533
           L   KKS DDITT  +R M+D  S  +S
Sbjct: 177 LCSPKKSKDDITTPKKRLMEDTYSPRES 204


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 528 SVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELA 650
           +++  L     I LL  +++ S+    CDNN + +LQ  +A
Sbjct: 554 NIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIA 594


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 691 EWVIGKFDTEIKELASSACKSTDELLSQTK 602
           +WV  K D E+KE+ +     TD  L  T+
Sbjct: 657 KWVFNKQDQEVKEIKALTSTVTDSTLVDTQ 686


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 73  QIISSGVNVELTNDSVTESK 14
           Q IS+ +N+E TNDS+ E+K
Sbjct: 93  QNISTTLNLEKTNDSIKETK 112


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +1

Query: 256 PWNHEPLR---NGLVSSMNP--LLD*RKRLRTLNYATTFIVI 366
           PW  + LR   +G+V  +     LD  K L  +NY  TFI+I
Sbjct: 444 PWQTQILRLHLDGVVEDVTESLFLDDIKALYVINYQNTFIII 485


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 646 SSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEK 512
           +SA  S+DE   Q       + +S++  + +  S+ KS L D+EK
Sbjct: 267 TSAKVSSDEYARQVDTLDTKLNSSSKSKVQEEISRLKSELRDLEK 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,235
Number of Sequences: 5004
Number of extensions: 55617
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)