Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L09
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    91   1e-18
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    91   1e-18
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    48   7e-06
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    31   0.70 
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    29   3.7  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        29   3.7  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    29   4.9  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    29   4.9  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   6.5  
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    28   8.6  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
 Frame = -3

Query: 768 PAYKGPWVHPEIDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-E 592
           PAYKG W+HPEI+NPEYT D  LY  +   A+G DLWQVKSGTIFD+ +ITD    A+  
Sbjct: 278 PAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAH 337

Query: 591 RGEVIKKRQ--EGEKKMKSEQ 535
             E   K +  E EKK K+++
Sbjct: 338 AAETFDKLKTVEKEKKEKADE 358


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
 Frame = -3

Query: 768 PAYKGPWVHPEIDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-E 592
           PAYKG W+HPEI+NPEYT D  LY  +   A+G DLWQVKSGTIFD+ +ITD    A+  
Sbjct: 278 PAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAH 337

Query: 591 RGEVIKKRQ--EGEKKMKSEQ 535
             E   K +  E EKK K+++
Sbjct: 338 AAETFDKLKTVEKEKKEKADE 358


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = -3

Query: 774 TTPAYKGPWVHPEIDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLIT---DDPA 604
           + PA+KG W    IDNP Y           I AVG+++W +    +FD+ LIT   +D +
Sbjct: 381 SNPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEMWTMSENILFDNILITSSEEDSS 440

Query: 603 AAKERGEVIKKRQE 562
              ++   +K+++E
Sbjct: 441 DVAKQTFYVKQKEE 454


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -3

Query: 741 PEIDNPEYTXDSNLYKRDEICAV---GLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKK 571
           P++ +P+Y    N+   D++  V    L    V    + D+ +        +E GE  KK
Sbjct: 271 PDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQETGEAEKK 330

Query: 570 RQEGEKKMKSEQ 535
           + E +KK K ++
Sbjct: 331 KDEKDKKDKKDE 342


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 105 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 275
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 105 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 275
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
            protein Y39A1C.2 protein.
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 247  SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLIIHN 414
            +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 857  TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 916

Query: 415  SLQLIV 432
             LQ ++
Sbjct: 917  DLQCLI 922


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 247 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLIIHN 414
           +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 445 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 504

Query: 415 SLQLIV 432
            LQ ++
Sbjct: 505 DLQCLI 510


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 62   GVLHRMLLYSKAVHSRPSTRCQTDNKTLNNY 154
            G+ + ML YS+A ++R   +C T+ ++L NY
Sbjct: 976  GICNAMLRYSRA-NNRHLKKCNTEEESLKNY 1005


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 645 GTIFDDFLITDDPAAAKERGEVIKKRQEGEKKMK 544
           G   D+    D+ A  KER E++KKR+E  K+ +
Sbjct: 654 GADSDESNSEDEEAEEKERQEILKKREEDLKRRR 687


>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 389 DIEYLGVRSVRAWRILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 252
           D  YL V      R +LLK  + +S  I     F    VRVF  NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,071
Number of Sequences: 27780
Number of extensions: 304304
Number of successful extensions: 963
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)