Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L03
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    27   3.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.4  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   7.2  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   9.5  

>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 414 LSHRKIKKAKKCHPDKLLTSNQQAMLPSIGPPPPVQHS 301
           +  + I+  KK HPDK+  ++Q A  P+  PP   +H+
Sbjct: 48  IKRKYIELVKKHHPDKMKNASQLA--PTESPPEINKHN 83


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 457 TRATPRVRMTSPAITKSSENQKGEKMSPGQTTDVKPTSNVAVNRSTTTCTTQQSDPIT 284
           T +      TS + T SS       + P  T    P S+     ++TT T+  S P+T
Sbjct: 256 TSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSA----NSTTATSASSTPLT 309


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/56 (19%), Positives = 23/56 (41%)
 Frame = -1

Query: 581 LNELIHKSPTAVFTRLNQPTTYTKTNIVTFSCLLRILFSTVHESYSPCKDDITRNY 414
           L+++    P      L     Y  + ++  +  + +L    ++ Y PC DD+   Y
Sbjct: 84  LSKITKNRPNVYIEYLYLFARYFGSGVILATAFIHLLAPACNKLYDPCLDDLFGGY 139


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 393 KAKKCHPDKLLTSNQQAMLPSIGPPPPVQ 307
           +A    P+KLL   + A    I PPPP+Q
Sbjct: 163 RAAVTDPEKLLEFARSAEGSIIAPPPPLQ 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,917
Number of Sequences: 5004
Number of extensions: 47834
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)