Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_L03
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 30 1.4
05_03_0501 + 14744913-14745107,14745545-14745571,14746002-147460... 30 1.8
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231... 29 2.4
12_02_1075 - 25854662-25855015,25855895-25856045,25856141-258563... 29 4.2
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 29 4.2
04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555 29 4.2
01_06_0045 - 25925083-25925307 29 4.2
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084 28 5.6
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539... 28 7.4
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -3
Query: 456 RELLPV*G*HHPQLLSHRKIKKAKKCHPDKLLTSNQQAMLPSIGPP-PPVQHSSLIQSPG 280
R+ +P G H PQ L ++ +K C K T PSI P +Q + +
Sbjct: 593 RDYIPSSGVHQPQPLENQMVKGQDLCQTHKTSTKYVADGNPSINTPVEHIQRTPIEVMSS 652
Query: 279 FESLN 265
F+S+N
Sbjct: 653 FQSVN 657
>05_03_0501 +
14744913-14745107,14745545-14745571,14746002-14746097,
14746479-14746769
Length = 202
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -3
Query: 408 HRKIKKAKKCHPDKLLTSNQQAMLPSIGPPP----PVQHSSLIQSPG 280
HR++K K P K ++ +P + PPP P+ HS L +PG
Sbjct: 120 HRRLKDRKP--PPKRQQLEEEVHVPVMAPPPVLPPPLPHSELTMAPG 164
>01_06_0359 +
28722524-28722613,28722794-28722863,28723062-28723159,
28724029-28724167,28724243-28724370,28724500-28724592,
28724707-28724757,28725405-28725470,28725568-28725633,
28725900-28725977,28726248-28726427,28726502-28726577,
28726660-28726823,28727569-28727931
Length = 553
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 375 PDKLLTSNQQAMLPSIGPPPPVQHSSLIQSP 283
P+ + S+ AM + PPP VQ +S+ Q P
Sbjct: 466 PNPFMASDPFAMSNQVAPPPSVQMASMTQQP 496
>12_02_1075 -
25854662-25855015,25855895-25856045,25856141-25856378,
25856494-25856704,25856973-25857088,25857844-25857877,
25857996-25858253
Length = 453
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -2
Query: 463 LCTRATPRVRMTSPAITK--SSENQKGEK-MSPGQTTDV 356
LCT+ TP++R + I K E G+K M PG TDV
Sbjct: 372 LCTQDTPKIRPSMSTIVKMLKGECAIGDKIMRPGLITDV 410
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 272 DSNPGDWIRLLCCTGGGGPIDGNIA 346
D +PGDW+ + G GG DG++A
Sbjct: 31 DGHPGDWLGVDWDAGAGGRHDGSLA 55
>04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555
Length = 384
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 466 PLCTRATPRVRMTSPAITKSSENQKG 389
P R+T RVR+TSPA S N +G
Sbjct: 76 PTAFRSTTRVRLTSPAFLPSRRNFEG 101
>01_06_0045 - 25925083-25925307
Length = 74
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 84 YMLLCVVPQCGT*LMPCFCKLLG 16
Y+ +CV QCGT PC CK+LG
Sbjct: 3 YVPVCV--QCGTHSNPCRCKVLG 23
>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
Length = 380
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 466 PLCTRATPRVRMTSPAITKSSENQKG 389
P R+T RVR+TSPA S N +G
Sbjct: 72 PTAFRSTVRVRLTSPAFLPSRRNFEG 97
>02_02_0584 -
11853149-11853573,11853673-11853787,11853868-11853981,
11854049-11854108,11854265-11854600,11854681-11854724,
11854776-11855507,11855736-11855921,11856012-11856153,
11856250-11856300
Length = 734
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 396 KKAKKCHPDKLLTSNQQAMLPSIGPPPPVQHSSLIQSP 283
KK T+++ A PS P PPVQ SS Q+P
Sbjct: 498 KKKTAVKKKSAATTSKPASPPSPPPSPPVQQSSSDQTP 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,957
Number of Sequences: 37544
Number of extensions: 302573
Number of successful extensions: 936
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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