Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L02
         (789 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7R955 Cluster: Putative uncharacterized protein PY0701...    35   2.0  
UniRef50_UPI00006CCA55 Cluster: F-box domain containing protein;...    33   8.2  

>UniRef50_Q7R955 Cluster: Putative uncharacterized protein PY07011;
           n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY07011 - Plasmodium yoelii yoelii
          Length = 333

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 337 TRKHNQTIFMNRKKRLKDNKNYEKYQRISQNELKMI 230
           T KHN+ IF  +KK  K NK Y+K   I +N LK +
Sbjct: 274 TPKHNKNIFYKKKKNFKKNKTYKK--NIFENILKKV 307


>UniRef50_UPI00006CCA55 Cluster: F-box domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: F-box domain
            containing protein - Tetrahymena thermophila SB210
          Length = 3050

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 538  FIVLRRIASAICRKILYYISFCLDLLISCNAISFNSD 428
            F++L++I S I R  +YY   CLD+L +CN +   ++
Sbjct: 1390 FLLLQQIQS-IRRSYIYYFCLCLDVLATCNRLPLQAN 1425


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,371,719
Number of Sequences: 1657284
Number of extensions: 12046068
Number of successful extensions: 27559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27551
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)