Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L02
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   4.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.1  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   9.4  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   9.4  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 340 KPFLIDGVVITRSNLHFDFYGIHFIVTDNCL 432
           + F  +G+V  RS+   D+  IH  + DN L
Sbjct: 691 REFFFEGIVQRRSDSRLDWLDIHLFLLDNYL 721


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 210 CIILNNRDECFVSKILILSPTSLYGQRPNMIFVICA*IMDECIAALLFDD 61
           CI+ + RD   V ++++ +P       P+ I    A ++DE    ++ DD
Sbjct: 90  CILWDLRDGSIVYQVVLSAPVWSASLHPHKINTFVASLLDESPQLIIVDD 139


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 496  ILYYISFCLDLLISCNAISFNSDSCQ-*Q*NVCHKNQNEDCFLL 368
            + Y +++ L  LI CN   FN D  Q  + N    +Q  +CF L
Sbjct: 1966 LFYALAYDLKFLIRCNQSQFNCDILQLLKENKQMSSQLHECFQL 2009


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 67  KQQRCNAFIHYLSTNHKNHVRTLSIQ 144
           K++  NAF+H++ST  K +   L+++
Sbjct: 65  KEKSYNAFLHWMSTVPKRYSNQLAVE 90


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 304 RKKRLKDNKNYEKYQRIS-QNELKMIL 227
           R+KRL++ +  E+YQ+ S  NE K  L
Sbjct: 53  REKRLEEKRKQERYQKFSTSNENKTCL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,158
Number of Sequences: 5004
Number of extensions: 56812
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)