Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K20
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    28   5.0  
L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 524 CIDLY*TRMWVVVKIDIVGSARAILDPVGLGIGARS 631
           CI+    + WV++ I I G+A   + P+GL +G  +
Sbjct: 321 CINYEGVQWWVILSIFIFGAAGFSIYPIGLEMGVEA 356


>L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical
           protein ZK686.3 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 59  LLNVFESIQNKNNEHLFT*YI*LRDYQKVVKFNVDE-RTILSM 184
           LL V+ES Q +  E      + L   Q +VKFN+D+ +T++ M
Sbjct: 2   LLAVYESAQQQTLEDKVQNLVDLTSRQSIVKFNMDKWKTLVRM 44


>U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical
           protein K02E10.7 protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 546 ECGLWLKSTLLVVREP 593
           EC LW+K+TL+V++ P
Sbjct: 226 ECDLWVKTTLIVLKGP 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,357
Number of Sequences: 27780
Number of extensions: 184448
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)