Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K19
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   4.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.1  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 236 WVISVLPRIESYLYIEDQYRILNLYIF*ICILMDASRFSRLI 111
           + + +   I SYL++ED+    N++   +C  +++S +S LI
Sbjct: 364 YCLDISEMISSYLHVEDE---KNVFYLALCEFLNSSDYSILI 402


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 148  QIQKIYRFNIRY*SSIYRYDSIRGKTDIT 234
            +I+ +YR  IRY S  +RY+ I    D+T
Sbjct: 999  EIRLLYRAMIRYGSLEHRYNDIVKYADLT 1027


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 383 FHYCKFLHLVNVLKAYCRNHRVLF*NHLSC 294
           F + KFLH+   +K + R HR    N + C
Sbjct: 204 FDFIKFLHVCVCVKCHGREHRSSGKNFVYC 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,248
Number of Sequences: 5004
Number of extensions: 32355
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)