Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K19
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0164 + 1146093-1146119,1146682-1146955,1147309-1147684,114...    30   0.87 
10_08_0455 - 18057525-18057791,18058077-18058313,18058568-180587...    28   3.5  

>02_01_0164 +
           1146093-1146119,1146682-1146955,1147309-1147684,
           1149021-1149239,1149572-1149710,1149844-1150092,
           1150556-1150855
          Length = 527

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 7   LRSYILISANQPYHVDLNLYLLRYYISVSFQISNIINRENLLASINIQIQKI 162
           L  Y+  S + PYHV LN Y  R+++S    +         LA  + Q+ K+
Sbjct: 164 LARYVRQSLDHPYHVSLNQYKARHHLSYLQTLPIRCTAMEELALADFQLNKL 215


>10_08_0455 -
           18057525-18057791,18058077-18058313,18058568-18058706,
           18058835-18059053,18059672-18060047,18060379-18060547
          Length = 468

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 7   LRSYILISANQPYHVDLNLYLLRYYISVSFQISNIINRENLLASINIQIQKI 162
           L  Y+  S   PYHV L  Y  R+++S    +         LA  N ++ K+
Sbjct: 120 LARYVRQSLEHPYHVSLMQYKARHHLSYLQTLPTRCTAMEELALANFKLNKL 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,310
Number of Sequences: 37544
Number of extensions: 158850
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)