Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K19
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical
           protein Y73C8C.7 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 251 VTNSEQSASII*TWRRIGGFKITPYDFYSRLLIHLLDVK 367
           VT+++ SA+ I T    GG+ +  YDFY  L  +++  K
Sbjct: 56  VTSAKFSATPIPTITPGGGYCVLAYDFYYNLATNMITAK 94


>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 25  ISANQPYHVDLNLYLLRYYISVSFQISNIIN----RENLLASINI 147
           +  N P + DLNL   RY  S   QIS  ++    REN++  ++I
Sbjct: 102 LGCNSPDYTDLNLPAFRYGQSAFQQISANVDVKPPRENVIKDVSI 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,168
Number of Sequences: 27780
Number of extensions: 161407
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)