Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K14
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    27   8.0  

>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 169 ESLKAMLDFCDSTISQKEAARRRNERVRDLPSRQEKKE 56
           E+L+   + C   +  + A RR  E  +DL S+QE+ E
Sbjct: 642 EALREAFNNCRQQLEDERADRRAEEERKDLESKQEQLE 679


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 428 VLFFVVNCLYRTEQERISNMKAKMRKKA 345
           ++FF+V C    +++ + N+  KMRK+A
Sbjct: 576 LIFFIVQCENGKDEKIVENLMEKMRKRA 603


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 242  ILRKRSSAQPSL*RKPAAADRRVVGVF 162
            ++RKRS  QP   + P+ +D+ ++G F
Sbjct: 1299 VVRKRSHGQPLEPKNPSESDKMIIGRF 1325


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +3

Query: 120 FCEIVESQKSSIAFKDSHDATVGSGGFPLQRWLCAAPLTQYDAGACAPRRLP 275
           + ++++ ++  I F  +  +     G P+  ++ A P TQ+D  +   +RLP
Sbjct: 27  YYDVMDRKREKIGFLYTQVSNAVWNGNPINGFMKALPSTQHDIQSLDAQRLP 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,377,205
Number of Sequences: 27780
Number of extensions: 145306
Number of successful extensions: 389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)