Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K13
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   222   4e-59
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    30   0.34 
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    29   0.60 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    29   0.79 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    28   1.8  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   7.4  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  222 bits (543), Expect = 4e-59
 Identities = 115/217 (52%), Positives = 145/217 (66%), Gaps = 1/217 (0%)
 Frame = -2

Query: 812 GKXVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPA 633
           GK V+PR+AA  DV  I+DIIG+  A+TFVR  YAGN  +T+  KDPIK++TVR +AF A
Sbjct: 125 GKGVMPRLAAMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTKDPIKIVTVRASAFDA 184

Query: 632 EPLEGGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLKSGDNF-KL 456
            P  G  AA            L E++ + + K+ RP+L+SA+ +V+GGR LK  + F ++
Sbjct: 185 APSSGEGAATVVEGIDPKPAALQEWVSENIIKNARPDLSSAERVVAGGRPLKDKETFERI 244

Query: 455 LYDLADKLNXXXXXXXXXXXXGFVPNDLQIGQTGKIVAPDLYIAVGISGAIQHLAGMKDS 276
           L  LADKL             G+  N LQIGQTGKI+AP LYIAVGI GAIQHLAG+KDS
Sbjct: 245 LTPLADKLGAAIGATRVAVDSGYADNSLQIGQTGKIIAPKLYIAVGIDGAIQHLAGIKDS 304

Query: 275 KTIVAINKDPEAPIFQVSDYGLVADLFKAVPELTSKL 165
           K I AIN+D  APIFQ +D G+V DLF+ VPELT KL
Sbjct: 305 KVIAAINRDENAPIFQTADVGIVGDLFEIVPELTEKL 341


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 254  KDPEAPIFQVSDYGLVADLFKAVPELTS 171
            KDPE  + +++ + ++ D FK +PE +S
Sbjct: 1276 KDPEGDLLELACFSMMIDFFKVLPEFSS 1303


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 524 ELTSAKNIVSGGRGLKSGDNFKLLYDLA 441
           +LT    I+S  RG KSGDNF  L++LA
Sbjct: 147 DLTQMAKIISTRRG-KSGDNFVYLFELA 173


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 365 GQTG-KIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEA 240
           G++G + V P  Y+A+   G    +A ++ +K +  +N+D EA
Sbjct: 114 GKSGIRRVVPGEYLAIDAKGRAAMIASVEKNKLVYVLNRDSEA 156


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 148 PLFRSKPRNLYRKIICIFCKFYVCSLKFVSTFYTVIKMRXLGIL 17
           PLF S+  NL R   C++C  +  S   V  F+  +K+   G+L
Sbjct: 89  PLFFSQMYNLLRST-CLYCHHFKLSKVKVHLFFCRLKLLDYGLL 131


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 338 DLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLF 195
           D+Y+    +G I+HLA  +  K +VA      +PI     YGL ++LF
Sbjct: 205 DVYLVERATGRIEHLASDQSKKIVVA----EWSPIGHKLVYGLGSNLF 248


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 496 DTIFLALVSSGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNA 645
           DT+ L   ++GLS    S   NST+    SPS     +AD  S+G +  A
Sbjct: 825 DTLSLKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSGISKKA 874


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 523 SGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNI 699
           SGL +L N+C+ NST  +L     A+   +D  S  ++   +     TL+ S+ S   +
Sbjct: 100 SGLINLGNTCYMNSTVQML----RAIPELSDAVSQFNSSGGLVAEYRTLLNSMQSNAPV 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,510
Number of Sequences: 5004
Number of extensions: 61280
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)