Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K13
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +3

Query: 255 VDCYNGFGVFHAGQVLNG 308
           ++ YN + ++H G+++NG
Sbjct: 139 IEPYNNYYIWHPGKIVNG 156


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +3

Query: 255 VDCYNGFGVFHAGQVLNG 308
           ++ YN + ++H G+++NG
Sbjct: 139 IEPYNNYYIWHPGKIVNG 156


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 243  FRIFVDCYNGFGVFHAGQVLNGTT 314
            ++I+V  YNG G      +LN  T
Sbjct: 1433 YQIYVTAYNGIGTGDPSDMLNTRT 1456


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 566 VEFLKQELTKSDRPELTSAKNIVSGGRGL 480
           V  L Q+  ++DR EL+  + + +GG  L
Sbjct: 112 VSGLTQQADQTDRDELSHVRALAAGGNHL 140


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 109 IICIFCKFYVCSLKFVSTFYT 47
           + CIF   YV  L F+  FY+
Sbjct: 221 VTCIFIWAYVIPLIFIILFYS 241


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 109 IICIFCKFYVCSLKFVSTFYT 47
           + CIF   YV  L F+  FY+
Sbjct: 221 VTCIFIWAYVIPLIFIILFYS 241


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 539  KSDRPELTSAKNIVSGGRGLKSG 471
            +SDRPEL+ A+  +   + LK G
Sbjct: 1878 RSDRPELSEAECDIDSLKKLKLG 1900


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 539  KSDRPELTSAKNIVSGGRGLKSG 471
            +SDRPEL+ A+  +   + LK G
Sbjct: 1874 RSDRPELSEAECDIDSLKKLKLG 1896


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,811
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)