Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K12
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.2  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.2  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.6  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   8.4  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    25   8.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   8.4  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = -2

Query: 581 KISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 450
           ++  D  +K++    +   LK++ E+K +  +++CN+    F E
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVE 149


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 520 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 633
           LS  ++  VGT     +G+I+K G+ + +L+    +VF
Sbjct: 491 LSTPTAVMVGTGVGALNGIIIKGGEILERLNQVDTVVF 528


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 109 YKFIHIEPGLIVEIKLGYLKIVKVN*TLKLD 201
           YK I+++PG +  I L  LKI+K N  ++ D
Sbjct: 612 YKTINVDPGDVRGIGLQALKIIKDNSKIRKD 642


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 318 IYYTRNSFQNHWHHGYMNVNFVNQSFLKSFFRTSTDLMH 434
           +YY  ++F N  H  Y N N   +SF   ++R S+ L H
Sbjct: 322 LYYISSAFSNLLHCRYFNCNDRLRSF---YYRFSSWLFH 357


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 532 SSPFVGTSFNCTSGLILKHGDTISKLSSSSF 624
           SSPF+  +F+CT    +   + + K +SSSF
Sbjct: 37  SSPFM--AFSCTQKPSVSENENVGKYASSSF 65


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 460 SLPKISLNMCMRSVEVLKNDFKND 389
           S PK+   M +RS + L+ND K+D
Sbjct: 411 STPKLIKRMSLRSKKSLRNDSKSD 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,883
Number of Sequences: 5004
Number of extensions: 55412
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)