Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_K10
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 39 8e-04
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 32 0.098
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 28 1.2
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 28 1.2
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 28 1.6
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 26 6.4
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 8.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 8.5
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 8.5
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 38.7 bits (86), Expect = 8e-04
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -2
Query: 614 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGY 435
L +D L +Y AG T AD + + + + + K Y N+KRW V S P
Sbjct: 148 LDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPAC 206
Query: 434 QEANEK 417
+ A EK
Sbjct: 207 RIAAEK 212
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 31.9 bits (69), Expect = 0.098
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = -2
Query: 641 AKNEKVQEALQLLDKFLEGQ----KYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVK 474
A+ K+ +AL+ ++ E Q KY P L LS A+ S+ S + +
Sbjct: 116 AEKRKILDALKSRKEYFETQALLEKYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQ 175
Query: 473 RWYETVKSTAPGYQEANEKGLEA 405
WY+ V G E +E EA
Sbjct: 176 HWYDRVLEGLVGANENSENNREA 198
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 71 CERDSGIL*NSIIQTSTGISKWVSHDKKRNVSIKCEQIILNLLIYFQAKG 220
C+ D + N+ + + +W+ KK+ + +CE +IL++L + + G
Sbjct: 1138 CQHDDYLQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLKFSG 1187
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 484 AYFLKSMSEASRLETLAMRLKSATVRFGPATYF*PSRNLSSS*RASWTFSFLALSAGAPA 663
A F M+ +++ T M + RF A+ S +SSS ++WT+ LS+GA +
Sbjct: 19 AAFALLMAIITKVLTACMGQTQNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWS 78
Query: 664 NTWG 675
T+G
Sbjct: 79 YTYG 82
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 677 YPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLE 513
Y Q + + +NE ++ L +L+ L+ + Y+ T+ADLS I+ + LE
Sbjct: 124 YHQELVISAITRYRNE-IKRVLGVLEDILKDRDYLVANRFTIADLSFISWNNFLE 177
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 686 DYFYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLI 534
++F+ + A + +NE ++ L +L+ L+ + Y+ T+ADLS I
Sbjct: 122 NFFHHEPVVSA-VTRYRNE-IKRVLGVLEDILKDRDYLVANKYTIADLSFI 170
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 275 YKQRRFNSA*LVNFNSSDVILNKFSFR 355
+ +R F SA L +F SDV + FSFR
Sbjct: 563 FSRRLFQSALLYSFKVSDVDDSHFSFR 589
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 599 KFLEGQKYVAGPNLTVADLSLIASVSSLEASDI 501
+F Q+Y+ + DL ++A SLEA DI
Sbjct: 459 EFQSTQRYLVLSEIGETDLDILAEPKSLEACDI 491
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 618 SPSAAGQVPRRSEVRGRTEPHRRRLES 538
+PSAA +VP++ + + +P RR S
Sbjct: 115 TPSAASEVPKKKYKKIKVDPSARRTSS 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,023
Number of Sequences: 5004
Number of extensions: 52586
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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