Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K09
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    29   2.5  
AF125952-7|AAD14695.1|  352|Caenorhabditis elegans Seven tm rece...    29   3.3  
AC006722-13|AAK68415.2|  352|Caenorhabditis elegans Hypothetical...    29   3.3  
U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine rece...    28   4.3  

>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 533 TTYRVLRSYYFKMTALLQWSDRLNHVLIRNKRKSL-YVFF 417
           +T R +RS+  +   L ++ DRL+  L  N++KS+ Y+F+
Sbjct: 384 STMRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAYLFY 423


>AF125952-7|AAD14695.1|  352|Caenorhabditis elegans Seven tm
           receptor protein 258 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 93  SNAYKNIKCTFVILLILHFTIYIMNYIIARIKIYLPVFLTKVND 224
           S+ +K+I+   ++ LIL  +I ++   I    IYL +F+ K N+
Sbjct: 241 SDKFKSIQQQLLLALILQTSIPVLLMHIPATAIYLTIFMRKSNE 284


>AC006722-13|AAK68415.2|  352|Caenorhabditis elegans Hypothetical
           protein Y19D10A.2 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 93  SNAYKNIKCTFVILLILHFTIYIMNYIIARIKIYLPVFLTKVND 224
           S+ +K+I+   ++ LIL  +I ++   I    IYL +F+ K N+
Sbjct: 241 SDKFKSIQQQLLLALILQTSIPVLLMHIPATAIYLTIFMRKSNE 284


>U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform b protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 96  NAYKNIKCTFVILLILHFTIYI 161
           NA + IKCTF+++ IL+F  ++
Sbjct: 181 NALEMIKCTFIMMAILNFITFL 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,059,088
Number of Sequences: 27780
Number of extensions: 228490
Number of successful extensions: 426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)