Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K05
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   144   5e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   142   2e-35
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   3.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.8  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   6.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   6.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   9.0  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  144 bits (350), Expect = 5e-36
 Identities = 71/124 (57%), Positives = 92/124 (74%)
 Frame = -3

Query: 468 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 289
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 288 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 109
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   RS+   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 108 AYRR 97
            YRR
Sbjct: 117 GYRR 120


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  142 bits (345), Expect = 2e-35
 Identities = 71/124 (57%), Positives = 92/124 (74%)
 Frame = -3

Query: 468 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 289
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 288 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 109
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++ D +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115

Query: 108 AYRR 97
            YRR
Sbjct: 116 GYRR 119


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 110 DLSSAERAGASGRPTGPRRT 169
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 386 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 294
           +H + L+  RFL + L ++C H+   +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 188 RLSVAGTISGGRCKNILKY 244
           R+   G+++GG CK  LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 216 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 109
           P I P ++   V   TVR G    PD P+ S   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 26  QDQLSLDQHQPFYHEVQHQGSAGVRLYADLSSAERAGAS 142
           +D  +  QH+    E++ Q   G+R ++DLS   + G+S
Sbjct: 52  EDGDTSSQHEDSSEELKRQEVRGMRRHSDLSIDAKLGSS 90


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -1

Query: 233 YSCTFLLKLCLQHLSAQYVQRQYAVALLVVLMPQPALLRTDLHTDVLLLTPGV 75
           Y CT+L K+    L   +VQ      LL+     P  L T + ++     P +
Sbjct: 717 YGCTYLSKVLFSMLDGIHVQSLDISELLMDTTTSPRSLLTKIFSEARKNAPSI 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,864
Number of Sequences: 5004
Number of extensions: 40477
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)