Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_K05
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   132   1e-31
Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical...    27   6.1  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  132 bits (319), Expect = 1e-31
 Identities = 67/123 (54%), Positives = 80/123 (65%)
 Frame = -3

Query: 468 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 289
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 288 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 109
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119

Query: 108 AYR 100
           AYR
Sbjct: 120 AYR 122


>Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +2

Query: 23  IQDQLSLDQHQPFYHEVQHQGSAGVRLYADLSSAERAGASGRPTGPR---RTVSVRTERL 193
           I++++S   H P+Y E++ Q    + +  D +      +      PR   R  S   + +
Sbjct: 175 IKERISFICH-PYYREIKDQDLEEIDIRYDNNETMLEISEALKIPPRYLERIKSKERKTV 233

Query: 194 SVAGTISGGRCKNILKYSIPSLV 262
           +VAG+I G     ILK+   S+V
Sbjct: 234 AVAGSIEGAHKLQILKFLYESIV 256


>Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +2

Query: 23  IQDQLSLDQHQPFYHEVQHQGSAGVRLYADLSSAERAGASGRPTGPR---RTVSVRTERL 193
           I++++S   H P+Y E++ Q    + +  D +      +      PR   R  S   + +
Sbjct: 175 IKERISFICH-PYYREIKDQDLEEIDIRYDNNETMLEISEALKIPPRYLERIKSKERKTV 233

Query: 194 SVAGTISGGRCKNILKYSIPSLV 262
           +VAG+I G     ILK+   S+V
Sbjct: 234 AVAGSIEGAHKLQILKFLYESIV 256


>AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical
           protein Y67A10A.2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 85  VSRSTSVCRSVLSRAGWGIRTTNRATAYCLCTY 183
           V  STS C S  S+  + IRT     + CL T+
Sbjct: 150 VINSTSTCSSSTSKTPFSIRTPLNQASQCLSTF 182


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 384 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 253
           AP   ++  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 171 TVRRGPVGRPDAPARSAEDRSAYRRTP 91
           T+   PVGR ++ ARS ++ SA R+ P
Sbjct: 8   TIENTPVGRGNSGARSHKEPSAKRKKP 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,972
Number of Sequences: 27780
Number of extensions: 238059
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)