Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_K02
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 155 6e-39
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 29 0.54
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.95
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.9
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.8
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 8.8
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 155 bits (375), Expect = 6e-39
Identities = 79/148 (53%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
Frame = -1
Query: 576 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 403
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 402 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 223
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 222 YDAILEDLVFPAEIVGKRI-QGQVGRLT 142
++AILED+VFP EI+GKR Q GR T
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKT 151
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = -2
Query: 164 RVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 27
R DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 143 RQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 29.1 bits (62), Expect = 0.54
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -1
Query: 621 PADVFPSRKVVKMSTKIIKASGAEADSFETSISQALVEL-ETNSDLKAQLREL-YITKAK 448
P+ P R ++K ST + SFE + S+ L E S + + L ++ K+
Sbjct: 56 PSFGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQHVEKSA 115
Query: 447 EIELHNKKSIIIYVPMPKL 391
IE ++K S + + P L
Sbjct: 116 RIETYSKLSSFLKIYTPSL 134
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.95
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = -1
Query: 621 PADVFPSRKVVKMSTK--IIKASGAEADSFETSISQALVELETN 496
PA+V +R+ + S K I +SG+E +F+T+ISQ E++T+
Sbjct: 14 PANVKKNRRRFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 284 LGLGRILRSPTKTTCLPLNFFSSSRTS 364
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 311 ETVRSCLSPATKPVLLTNKRGHAQ 240
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -1
Query: 414 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 322
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 256 KEATLKDIDLCVRCYPRGLGLPC 188
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 145 EPSNLTLYALAYDL 186
EP +L YALAYDL
Sbjct: 1961 EPDSLLFYALAYDL 1974
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/37 (21%), Positives = 18/37 (48%)
Frame = +1
Query: 100 IVVCWFLSKCTLMSCEPSNLTLYALAYDLSREDQVLE 210
+ CW+L + EP+N + D++ ++ L+
Sbjct: 843 VTACWYLFYVAVQQIEPTNSQYFLRTLDITLNNEKLK 879
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 294 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 169
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,676
Number of Sequences: 5004
Number of extensions: 49709
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -