Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_K02
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 140 1e-33
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 124 4e-29
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 75 5e-14
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.3
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 3.0
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.9
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.9
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.9
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 6.9
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 6.9
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 140 bits (338), Expect = 1e-33
Identities = 73/140 (52%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Frame = -1
Query: 576 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 403
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 402 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 223
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 222 YDAILEDLVFPAEIVGKRIQ 163
+D ILED+V+PAEIVGKRI+
Sbjct: 123 HDGILEDVVYPAEIVGKRIR 142
Score = 55.2 bits (127), Expect = 4e-08
Identities = 20/46 (43%), Positives = 36/46 (78%)
Frame = -2
Query: 164 RVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 27
R +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 142 RYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 124 bits (300), Expect = 4e-29
Identities = 66/122 (54%), Positives = 90/122 (73%), Gaps = 2/122 (1%)
Frame = -1
Query: 522 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 349
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 348 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 169
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 168 IQ 163
++
Sbjct: 154 VR 155
Score = 54.0 bits (124), Expect = 9e-08
Identities = 20/46 (43%), Positives = 34/46 (73%)
Frame = -2
Query: 164 RVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 27
R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 155 RYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 74.9 bits (176), Expect = 5e-14
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = -1
Query: 468 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 289
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 288 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 175
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 254 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 370
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 249 PRSRTLTSVYDAILEDLVFPAEIVGKRI 166
P +RTLT+ +D IL+D + A+I GK +
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHV 112
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = -1
Query: 516 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 382
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 516 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 382
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -1
Query: 567 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 391
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 390 KAFQKI 373
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = -1
Query: 516 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 382
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -1
Query: 591 VKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 412
V++ + ++ S E +SF S+ + + + D L + Y KEI N+ ++ +
Sbjct: 528 VRVQEQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEI---NRLTLDM 584
Query: 411 YVPMPKLKAFQKIQIRL---VRELEKKFSGKHV 322
+ +L F +++ L V EL+K+ + V
Sbjct: 585 EMANDRLNDFNLVRLNLENTVCELKKEVTSLEV 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,419,443
Number of Sequences: 37544
Number of extensions: 333424
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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