Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J23
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    27   1.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   4.5  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    25   6.0  

>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 233 RCVVAPILKYLATCS 277
           RCV++P +K+LATCS
Sbjct: 220 RCVLSPDVKHLATCS 234


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -1

Query: 399 NFVKIKIHSEIMKINKSHSLTHGEPGPDRHTCTCLYSLNR*EQVAKY 259
           NF K K+ SEI++ +  HS+       ++ T   + S      +++Y
Sbjct: 588 NFTKEKLESEIVRFSFEHSILINTSNDEKETAQWIVSFTGDIALSRY 634


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 399 NFVKIKIHSEIMKINKSHSLTHGEPGPDRHTCTCLYSL 286
           NF ++ I+ E+M+ + +  +  G+P  D H  + +Y +
Sbjct: 96  NFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,983
Number of Sequences: 5004
Number of extensions: 36036
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)