Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J23
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171...    29   3.5  

>10_01_0145 -
           1708597-1708824,1710225-1710468,1711217-1711263,
           1711767-1711857,1712982-1713094,1713387-1713462,
           1713501-1713560,1713759-1713835,1714105-1714672,
           1715332-1715509,1715632-1715774,1717255-1717424,
           1717588-1717822,1718565-1718779
          Length = 814

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 9   TNLSVXSFNLISASFFVLMHSTGIVKFFVNISSIDFTQALHYESLNYIN 155
           TNL+V    LIS S FV +H    + F   +  I+F +   +E +N  N
Sbjct: 497 TNLAVMK-KLISNSLFVTIHHMLFLDFTEILIPIEFIRLWKFEGINMFN 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,223,419
Number of Sequences: 37544
Number of extensions: 192940
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)