Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J23
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin...    27   9.5  

>U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical
           protein F13H8.11 protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 393 VKIKIHSEIMKINKSHSLTHGEPGPDRHTCTCLYSLNR*E 274
           + +KIHS+  K++K    +H      R TC+C++ LN  E
Sbjct: 235 INVKIHSQAHKLSKFCEFSH------RKTCSCIFELNEKE 268


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 39  ISASFFVLMHSTGIVKFFVNISSIDFTQALHYESLNYINDMLFIVY 176
           I+ +  + +H  GI+  F+ ISSI       +++  Y+N++ F+VY
Sbjct: 7   ITVTLIIALHFCGIITTFLPISSI------FHDNFEYLNEIWFLVY 46


>Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical
           protein F55F3.1 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 241 DTPVMCNANLLTNQNKIRLFYLYTMN 164
           DTPV C+ N+L   + + L +LY ++
Sbjct: 217 DTPVQCDPNVLPEPDHVMLNHLYALS 242


>AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin
           protein 5 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 220 HCTLQVCRSTNSEVFSHLFS 279
           HC  ++C+ TN   F+ +FS
Sbjct: 219 HCKTRICKKTNDPEFNEMFS 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,664
Number of Sequences: 27780
Number of extensions: 207121
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)