Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J20
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    28   5.9  
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274...    28   7.8  

>06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,
            2977887-2977977,2978305-2978384
          Length = 956

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 120  LFFLKQPSQFDHGVFNEKXLKTKEFIYEHILYVYKQVFSCV 242
            L FL++P     G+ N   LK  EF  + IL V  +V SCV
Sbjct: 895  LSFLREPKYGISGLENLPKLKEIEFFGDIILSVVTKVASCV 935


>07_03_0363 +
           17225472-17226778,17226910-17226917,17227313-17227488,
           17227822-17227882,17227955-17228053,17228155-17228249,
           17228411-17228482,17228668-17228735,17228934-17229390,
           17229486-17229596
          Length = 817

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 484 RYTLGKVYRKIIKKSIYLNIYSTRGELPYADDDYN 380
           +Y++  V  K +KKS+Y +    +GE+ Y +  YN
Sbjct: 631 KYSISIVADKGLKKSLYTSARLKKGEVIYLETHYN 665


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,258,863
Number of Sequences: 37544
Number of extensions: 163312
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)