Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_J19
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 197 8e-51
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 36 0.053
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 31 1.5
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537... 29 3.5
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 29 4.6
12_02_0129 - 13981684-13982529 29 6.1
12_02_0112 + 13783758-13784717 29 6.1
08_01_0414 + 3684491-3684589,3684770-3684838,3685004-3685033,368... 29 6.1
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487... 28 8.0
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 197 bits (481), Expect = 8e-51
Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 11/234 (4%)
Frame = -1
Query: 756 RTGVQGLWRISXRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPE 577
R + L ++ S +A+ + S H D+PE+NP +P+EF++AN K+V +L+ YP
Sbjct: 7 RLAARRLLGLATSSASESAAARRLSRSPHLDSPENNPDMPWEFTEANMKKVNEILSHYPS 66
Query: 576 GHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 397
+K+ +IP+LDLAQ+Q GGW+P++AM+ +A+I+ + +RVYEVATFYTMF R +GKYH
Sbjct: 67 NYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYH 126
Query: 396 VQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVND- 220
+ VC TTPC +RGS I A+ + + + G FSV E+EC+G CVNAPMI V D
Sbjct: 127 LLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADY 186
Query: 219 ---------DYYEDLSVEDTKEIISKLKKDEKPKPGPR-SGRFASEPLGGLTSL 88
+YYEDL+ + EI+ LK+ E P G + R P GG T+L
Sbjct: 187 SKGSEGYTYNYYEDLTPKRVVEIVEMLKRGETPPRGTQHPERKNCGPAGGNTTL 240
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 35.5 bits (78), Expect = 0.053
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 339 AIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY--YEDLSVEDTKEIISKL 166
A+K EV G+ P G F + + + P I +ND Y +E ED +E+ +L
Sbjct: 229 AVKSSETSEVKGSLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEVDDRL 288
Query: 165 KKDE 154
+++E
Sbjct: 289 EEEE 292
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 36 RLEVHLVLRSQALWVLQSARSILREAQTRIFHSWAQVWASRP 161
R +VH L QALW S+L E + + S+A WAS+P
Sbjct: 70 RSQVHPELCVQALWAENLKESLLPELENSMRESFAS-WASKP 110
>11_06_0617 -
25552308-25552978,25553384-25553454,25553691-25553727,
25553807-25553927,25554309-25554428,25554834-25555130,
25555286-25555288
Length = 439
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 528 VVVPDPVKESWHLACDLQGKWPTKPLLSFD 617
VVV D V +S HLA + G W + P FD
Sbjct: 313 VVVADVVMDSVHLAIEFTGNWSSHPDDHFD 342
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 399 HVQVCTTTPCWLRGSDAILNA-IKQETNCEVGGNSP 295
H+ C +TP W R SD LN KQ+ + E G +P
Sbjct: 289 HMITCPSTPEWKRSSDLDLNGEAKQDDDDENGDLAP 324
>12_02_0129 - 13981684-13982529
Length = 281
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 732 RISXRSIQTTASRQHDSLFVHRDTPEDN 649
R++ R + + A R HD+ +HRD DN
Sbjct: 81 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 108
>12_02_0112 + 13783758-13784717
Length = 319
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 732 RISXRSIQTTASRQHDSLFVHRDTPEDN 649
R++ R + + A R HD+ +HRD DN
Sbjct: 119 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 146
>08_01_0414 +
3684491-3684589,3684770-3684838,3685004-3685033,
3685540-3685596,3685884-3685954,3686185-3686266,
3686470-3686559,3686647-3686685
Length = 178
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -1
Query: 201 SVEDTKEIISKLKKDE 154
++EDTK++ISK KKDE
Sbjct: 111 NIEDTKQMISKAKKDE 126
>04_04_0090 -
22747049-22747282,22747438-22747847,22748562-22748757,
22749511-22749583,22749673-22749753,22749855-22749940,
22750050-22750126,22750313-22750409,22751025-22752020,
22752882-22752926
Length = 764
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -1
Query: 192 DTKEIISKLKKDEKPKPGPRSGRFASEPLGGLTSLTEEPTGPGFGVQDALQGVN 31
D +E+ K K+D++ K G + G S GG S+ EE G GV++ L+G +
Sbjct: 293 DRQEVKHKRKQDKRKKKGKKGGG-GSGGGGGGGSIGEE-VPKGGGVRERLKGAS 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,158,545
Number of Sequences: 37544
Number of extensions: 532674
Number of successful extensions: 1409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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