Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J19
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical pr...   291   3e-79
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical ...    29   5.4  
U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine rece...    28   9.5  
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    28   9.5  

>Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical
           protein F53F4.10 protein.
          Length = 239

 Score =  291 bits (715), Expect = 3e-79
 Identities = 132/214 (61%), Positives = 167/214 (78%)
 Frame = -1

Query: 681 LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 502
           L VHRDT E+N ++ F+F+  NQ+R++A++ IYPEGHK GA+IPLLDLAQRQ G WLPIS
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPIS 85

Query: 501 AMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQET 322
           AMH+VA+IL +P+MR YEVATFYTMF R+P+GKY +QVC TTPC LRG++ I   I+++ 
Sbjct: 86  AMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 321 NCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKP 142
               G  +  G F+++EVECLGACVNAPMIQ+NDDY+EDL+ +D  EI+  LK   KP  
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRKPAA 205

Query: 141 GPRSGRFASEPLGGLTSLTEEPTGPGFGVQDALQ 40
           GPRSGR A+EP G LTSL E P GPGFG+Q AL+
Sbjct: 206 GPRSGRLAAEPFGELTSLKETPPGPGFGLQAALK 239


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 582 PEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 427
           P+  +R A+   L LAQ   G W+  S +       ++P++  Y +AT  TM
Sbjct: 162 PDMKRRMALATTLLLAQGGIGWWMVKSGLDPSKNSSDVPRVSQYRLATHLTM 213


>AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.3 protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -1

Query: 390 VCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY- 214
           VC ++P  L     +  +I+   + + G N      S  +    GAC+  P I  +  Y 
Sbjct: 84  VCVSSPPPLSHHSYLETSIETSKSEQCGANRKTTSMSFQKSFVTGACLTYPFIGQSLTYR 143

Query: 213 -YEDLSVEDTKEIIS 172
             EDL+ +D  +I++
Sbjct: 144 NQEDLAAQDYSKIMT 158


>U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine
           receptor, class w protein112 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
 Frame = +1

Query: 52  LYSEARPCGFFSQRGQSSERLRRESS--TPGPRFGLLVLL*FADNFFCIFYRQVLIVIII 225
           L  E R      ++  SS   +++SS  T    F L V+    +    +FY  +L  I+ 
Sbjct: 245 LIIEIRKAAINRKKISSSSSSQQDSSGRTTKLIFYLTVIFYIGEFPMAVFY--ILNPILQ 302

Query: 226 DLYHWGVHTSSQTFNL*NRKLATRTVASNLTVCFLFNCIQYGIRA 360
               WG +T    F      L T T A ++ +C L +  QY I A
Sbjct: 303 MSIQWGFYTYLVYFEFLFSTLLTATTAIHMPICLLMSS-QYKITA 346


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 414 PIGKYHVQVCTTTPCWLRGSDAILNAIKQETNC 316
           P+  YH+ +CTT     +G   +++   +ET C
Sbjct: 184 PLNIYHMPICTTIGLLDKGQIVVIDPTDKETAC 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,294,828
Number of Sequences: 27780
Number of extensions: 447392
Number of successful extensions: 1190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)