Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J15
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z68760-13|CAD30434.1|  423|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical p...    29   2.3  
X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.        29   2.3  
AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL032641-7|CAD30455.1|  423|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 331 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 363


>Z68760-13|CAD30434.1|  423|Caenorhabditis elegans Hypothetical
           protein F36H1.4c protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 292 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 324


>Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 305 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 337


>Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 307 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 339


>X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 307 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 339


>AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 331 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 363


>AL032641-7|CAD30455.1|  423|Caenorhabditis elegans Hypothetical
           protein F36H1.4c protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 292 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 324


>AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 305 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 337


>AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 PXINKLKQ*RNXDRNKEIKNNQQARNNLYCVIK 269
           P I+     R   R + I+NN+QARNN + +++
Sbjct: 307 PNISSTPGSRIPTRQQAIRNNEQARNNFFSILR 339


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 123 YNINKLCIKFIEDTQLTKTTTCYSVII*MTSVDISNVYNSNFEQGQQCYFI 275
           YN+ K  +K  E +  +   T + + + +TS+ +SN Y +N   G    F+
Sbjct: 208 YNMKKKGVKVPETSLFSMAFTVFVIDLFLTSLTVSNYYLTNLAIGSDSDFV 258


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 72  SHENKRIEKCNRNAQHHYNINKLCIKFIEDTQLTKTTTCY 191
           SH    +E  ++N  HH +I +L   F++   +  T+  Y
Sbjct: 23  SHSRSNLESASKNMGHHISIEELFYSFVKQDGVQSTSRGY 62


>Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical
           protein T19C4.4 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 177 TTTCYSVII*MTSVDISNVYNSNFEQGQQCYFI 275
           TTTC SV + +TS+ I N  N    Q  +  FI
Sbjct: 186 TTTCVSVFVNVTSIAIVNQMNVQVRQEVEYNFI 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,964,462
Number of Sequences: 27780
Number of extensions: 196955
Number of successful extensions: 476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)