Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J13
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    72   2e-14
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    71   4e-14
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    23   7.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    23   9.9  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 72.1 bits (169), Expect = 2e-14
 Identities = 30/48 (62%), Positives = 35/48 (72%)
 Frame = -3

Query: 148 AGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTXV 5
           AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NLD+LWT V
Sbjct: 35  AGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLV 82


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 70.9 bits (166), Expect = 4e-14
 Identities = 29/46 (63%), Positives = 34/46 (73%)
 Frame = -3

Query: 148 AGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 11
           AGG  H R + DKYHPGYFGK+GMR FH  KN  + P +NLD+LWT
Sbjct: 35  AGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWT 80


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 146 WW*APSQNQHGQVPS 102
           W  +PS+NQH  VPS
Sbjct: 431 WQCSPSRNQHELVPS 445


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 116 GQVPSWILWQTWYEK 72
           GQV ++IL  +WYE+
Sbjct: 73  GQVDNYILSYSWYER 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,004,249
Number of Sequences: 5004
Number of extensions: 15038
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)