Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_J13
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0027 + 16593133-16593573 80 4e-16
02_01_0563 + 4134954-4135388 80 4e-16
07_03_1250 - 25183375-25183815 79 5e-16
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 32 0.075
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 2.1
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 3.7
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 26 4.9
07_03_1737 + 29137654-29137842,29137999-29138061,29138196-291382... 26 4.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 26 4.9
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301... 26 4.9
11_05_0053 + 18687430-18687524,18687804-18687936,18688153-186882... 26 6.5
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 25 8.6
>03_04_0027 + 16593133-16593573
Length = 146
Score = 79.8 bits (188), Expect = 4e-16
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = -3
Query: 151 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTXV 5
NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++LW+ V
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCPAVNVERLWSMV 82
>02_01_0563 + 4134954-4135388
Length = 144
Score = 79.8 bits (188), Expect = 4e-16
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = -3
Query: 151 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTXV 5
NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP +N+++LW+ V
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWSMV 82
>07_03_1250 - 25183375-25183815
Length = 146
Score = 79.4 bits (187), Expect = 5e-16
Identities = 31/49 (63%), Positives = 39/49 (79%)
Frame = -3
Query: 151 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTXV 5
NAGG HHHRI DKYHPGYFGK+GMR FH +NK + P +N+++LW+ V
Sbjct: 34 NAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSPAVNVERLWSMV 82
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 32.3 bits (70), Expect = 0.075
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 127 CDGAHHQHYHDLLDAYGACRYDHVRD*HDLSAS-XSSFLR 243
C G HH H+H L G+C + ++ H+L+ S +SFL+
Sbjct: 165 CYGEHHHHHHHQLTKEGSCNHQQ-QEQHELAISPMASFLQ 203
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 124 FCDGAHHQHYHDLLDAYG 177
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 145 GGEHHHRINMDKYH 104
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -2
Query: 143 W*APSQNQHGQVPSWILWQTWYEK 72
W A Q GQ P W +W W K
Sbjct: 490 WDAGGLYQVGQFPHWKIWSEWNGK 513
>07_03_1737 +
29137654-29137842,29137999-29138061,29138196-29138267,
29138411-29138518,29138615-29138695,29138818-29138871,
29138956-29139081,29139162-29139251,29139444-29139566,
29139667-29139777,29139927-29140040,29140214-29140270,
29140350-29140424,29140526-29140600
Length = 445
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 130 DGAHHQHYHDLLDAYGACRYDHVRD 204
D ++ ++HD+ DA+G HV++
Sbjct: 284 DDKYYPYFHDVYDAFGDSEEKHVKE 308
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 133 GAHHQHYHDLLDAYGACRYDH 195
G HH+H+HD +G DH
Sbjct: 533 GRHHRHHHDHRHRHGHSHGDH 553
>02_05_0608 +
30329174-30329362,30329681-30329907,30330035-30330190,
30330893-30331078,30331184-30331368,30331571-30331602
Length = 324
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 107 PSWILWQTWYEKFPL 63
P WILW T YE P+
Sbjct: 245 PFWILWSTSYEVVPM 259
>11_05_0053 +
18687430-18687524,18687804-18687936,18688153-18688236,
18689045-18689194,18689319-18689510
Length = 217
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 139 HHQHYHDLLDAYGACRYDHVRD 204
H + + + +AYG CRYD +R+
Sbjct: 150 HGRRWVPVEEAYGLCRYDWMRE 171
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 130 DGAHHQHYHDLLDAYG 177
D AHHQH L D YG
Sbjct: 1647 DSAHHQHRKTLDDLYG 1662
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,734,872
Number of Sequences: 37544
Number of extensions: 105645
Number of successful extensions: 305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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