Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J13
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    91   1e-19
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    38   0.001
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   2.6  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    27   2.6  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    25   7.9  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 33/49 (67%), Positives = 43/49 (87%)
 Frame = -3

Query: 151 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTXV 5
           NAGG+HHHRIN DKYHPGYFGK+GMR FH  KN+++CP +N+++LW+ V
Sbjct: 34  NAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNQHYCPTVNVERLWSLV 82


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
          protein Y37E3.8b protein.
          Length = 88

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = -3

Query: 79 MRNFHFRKNKNFCPVLNLDKLWTXV 5
          MR FH  KN+++CP +N+++LW+ V
Sbjct: 1  MRVFHLNKNQHYCPTVNVERLWSLV 25


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = -3

Query: 145 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 14
           G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 29  VQNWTEILVLSKVEISHTKFAKVSR 103
           + NWT  L LSKV   H  F  ++R
Sbjct: 20  IANWTVFLFLSKVPSIHKSFGSLTR 44


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 145 GGEHHHRINMDKYHPGYFGKLGMRNF 68
           G  HH +++   +  GY   LG+R+F
Sbjct: 401 GNGHHGKVDFGTWGGGYSDNLGVRDF 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,612,753
Number of Sequences: 27780
Number of extensions: 86939
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)