Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J12
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    68   1e-12
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   5.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   9.2  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = -3

Query: 771 YDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIES 592
           YD+ Y+MK   N   GLQ++AD L++ R+GPQHQAGSD+ LT           FD +I+S
Sbjct: 203 YDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDS 262

Query: 591 SS-GHLYGLGAPFSVNVNN 538
                LYGLG+  SV  +N
Sbjct: 263 RMLNQLYGLGSTGSVLWHN 281


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 563 APRPYKCPL 589
           APRPYKCPL
Sbjct: 22  APRPYKCPL 30


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 464 NYAYFTLKNKWTNSDTIT 411
           NY Y T+   WT S T+T
Sbjct: 708 NYGYTTITTGWTGSTTLT 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,217
Number of Sequences: 5004
Number of extensions: 57197
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)