Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_J12
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1070 + 33872845-33873726 66 3e-11
09_04_0126 + 14874739-14875581 64 9e-11
08_02_0807 + 21411799-21412665 60 1e-09
07_01_0499 - 3738959-3740068 44 2e-04
04_04_1644 + 35015849-35016838 42 7e-04
10_08_0041 - 14374684-14377339,14377371-14378233 38 0.012
06_01_0276 + 2035763-2036770 36 0.036
10_08_0036 + 14325793-14326457,14326610-14328035 32 0.44
09_02_0090 - 4147108-4147191,4147629-4147697,4148089-4148343,414... 29 3.1
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634 29 5.4
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326 28 7.2
>02_05_1070 + 33872845-33873726
Length = 293
Score = 66.1 bits (154), Expect = 3e-11
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
VYD+ +LMK C +L GGL ++A+ L++ RVG HQAGSDS +T A F + E
Sbjct: 216 VYDIKHLMKFCNSLHGGLNKLAELLDVERVGESHQAGSDSLVTSCAFWKLKDSFFAGSTE 275
Query: 594 SSSGHLYGLGA 562
+G LYGL A
Sbjct: 276 KYAGVLYGLNA 286
>09_04_0126 + 14874739-14875581
Length = 280
Score = 64.5 bits (150), Expect = 9e-11
Identities = 32/70 (45%), Positives = 45/70 (64%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
VYD+ +LM+ C +L GGL ++A+ L++ RVG HQAGSDS LT ++ F+ E
Sbjct: 200 VYDIKHLMRFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTALSFKKLKEAYFNGLTE 259
Query: 594 SSSGHLYGLG 565
+G LYGLG
Sbjct: 260 KYAGVLYGLG 269
>08_02_0807 + 21411799-21412665
Length = 288
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YD+ +LM+ C NL GGL + + L+++RVG HQAGSDS LT F + E
Sbjct: 204 LYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKEVYFKGSTE 263
Query: 594 SSSGHLYGLGAPFSVN 547
+G LYGL VN
Sbjct: 264 KHAGVLYGLVIEDGVN 279
>07_01_0499 - 3738959-3740068
Length = 369
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -3
Query: 774 VYDVXYLMKLCK-NLKGGLQEVADQLELRR-VGPQHQAGSDSHLTGMAXXXXXXXXFDD 604
+YDV + + C +++GGL+ VA +L +RR VG HQAGSDS LT FDD
Sbjct: 288 LYDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQAGSDSLLTSQMFMRMRERYFDD 346
>04_04_1644 + 35015849-35016838
Length = 329
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -3
Query: 774 VYDVXYLMKLCKN-LKGGLQEVADQLELRRV-GPQHQAGSDSHLT-GMAXXXXXXXXFDD 604
VYDV ++M+ C L GGL+ VA L+++R G HQA SDS LT +
Sbjct: 238 VYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFRRMRELYFLKH 297
Query: 603 NIESSSGHLYGL 568
+E+ G L+GL
Sbjct: 298 GVEAYQGVLFGL 309
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKN-LKGGLQEVADQLELRRVGPQHQAGSDSHLT 646
VYDV L KL K+ G L +A+ L + R G +H AGSD+ LT
Sbjct: 839 VYDVRVLGKLVKDGFNGSLTALAEYLGIPRNGDEHHAGSDALLT 882
>06_01_0276 + 2035763-2036770
Length = 335
Score = 35.9 bits (79), Expect = 0.036
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = -3
Query: 774 VYDVXYLMKLCKN---LKGGLQEVADQLELRRV-GPQHQAGSDSHLT 646
V DV +L K C ++GGL+ VA L + R G H AGSDS LT
Sbjct: 252 VLDVKHLAKFCGGGGGIRGGLEHVAAALGVHRAAGRAHNAGSDSLLT 298
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKN-LKGGLQEVADQLELRRVGPQHQAGSDSHLT 646
+YD+ L +L ++ +G L +AD L + R G H AG D+ LT
Sbjct: 355 LYDIRVLGQLVQHGFRGSLTAIADLLGVNRFGRGHHAGVDALLT 398
>09_02_0090 -
4147108-4147191,4147629-4147697,4148089-4148343,
4148701-4148865,4149000-4149044,4149193-4149267,
4149397-4149573,4149680-4149904,4150058-4150183
Length = 406
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 768 DVXYLMKLCKNL-KGGLQEVADQLELRRV 685
D+ Y++++CKNL L EV D+ EL RV
Sbjct: 253 DIKYMLRICKNLGMTALIEVHDERELDRV 281
>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
Length = 846
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 741 KNLKGGLQEVADQLELRRVGPQHQAGSDS 655
K L GG++ ++D LEL GPQ + D+
Sbjct: 382 KKLPGGIECISDMLELSTTGPQLEQFKDT 410
>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
Length = 386
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 464 CGECLDTHADSADQEEFPFSP 526
CG C + D +D EEF F P
Sbjct: 82 CGSCFNGGGDGSDDEEFDFLP 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,774
Number of Sequences: 37544
Number of extensions: 302524
Number of successful extensions: 609
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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