Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_J12
(776 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L46722-1|AAF01500.1| 262|Homo sapiens BTG1 binding factor 1 pro... 101 4e-21
BC070187-1|AAH70187.1| 285|Homo sapiens CCR4-NOT transcription ... 101 4e-21
BC060852-1|AAH60852.1| 285|Homo sapiens CCR4-NOT transcription ... 101 4e-21
AF086915-1|AAP97145.1| 285|Homo sapiens CAF1 protein. 101 4e-21
BT006857-1|AAP35503.1| 292|Homo sapiens CCR4-NOT transcription ... 95 3e-19
BC017366-1|AAH17366.1| 292|Homo sapiens CNOT8 protein protein. 95 3e-19
AK025358-1|BAB15119.1| 292|Homo sapiens protein ( Homo sapiens ... 95 3e-19
AF180476-1|AAF29830.1| 292|Homo sapiens CALIFp protein. 95 3e-19
AF087844-1|AAP97157.1| 292|Homo sapiens CAF2 protein. 95 3e-19
AF053318-1|AAD02685.1| 292|Homo sapiens CCR4-associated factor ... 95 3e-19
BT006685-1|AAP35331.1| 246|Homo sapiens CCR4-NOT transcription ... 84 6e-16
BC007315-1|AAH07315.1| 246|Homo sapiens CNOT7 protein protein. 84 6e-16
>L46722-1|AAF01500.1| 262|Homo sapiens BTG1 binding factor 1
protein.
Length = 262
Score = 101 bits (241), Expect = 4e-21
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTGMA F+D+I+
Sbjct: 169 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHID 228
Query: 594 SSS--GHLYGLGA 562
+ GHLYGLG+
Sbjct: 229 DAKYCGHLYGLGS 241
>BC070187-1|AAH70187.1| 285|Homo sapiens CCR4-NOT transcription
complex, subunit 7 protein.
Length = 285
Score = 101 bits (241), Expect = 4e-21
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHID 251
Query: 594 SSS--GHLYGLGA 562
+ GHLYGLG+
Sbjct: 252 DAKYCGHLYGLGS 264
>BC060852-1|AAH60852.1| 285|Homo sapiens CCR4-NOT transcription
complex, subunit 7 protein.
Length = 285
Score = 101 bits (241), Expect = 4e-21
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHID 251
Query: 594 SSS--GHLYGLGA 562
+ GHLYGLG+
Sbjct: 252 DAKYCGHLYGLGS 264
>AF086915-1|AAP97145.1| 285|Homo sapiens CAF1 protein.
Length = 285
Score = 101 bits (241), Expect = 4e-21
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHID 251
Query: 594 SSS--GHLYGLGA 562
+ GHLYGLG+
Sbjct: 252 DAKYCGHLYGLGS 264
>BT006857-1|AAP35503.1| 292|Homo sapiens CCR4-NOT transcription
complex, subunit 8 protein.
Length = 292
Score = 95.1 bits (226), Expect = 3e-19
Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 594 SSS--GHLYGLGAPFSVNVNNFQD 529
+ G LYGLG + N D
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVD 275
>BC017366-1|AAH17366.1| 292|Homo sapiens CNOT8 protein protein.
Length = 292
Score = 95.1 bits (226), Expect = 3e-19
Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 594 SSS--GHLYGLGAPFSVNVNNFQD 529
+ G LYGLG + N D
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVD 275
>AK025358-1|BAB15119.1| 292|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21705 fis, clone COL09940. ).
Length = 292
Score = 95.1 bits (226), Expect = 3e-19
Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 594 SSS--GHLYGLGAPFSVNVNNFQD 529
+ G LYGLG + N D
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVD 275
>AF180476-1|AAF29830.1| 292|Homo sapiens CALIFp protein.
Length = 292
Score = 95.1 bits (226), Expect = 3e-19
Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 594 SSS--GHLYGLGAPFSVNVNNFQD 529
+ G LYGLG + N D
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVD 275
>AF087844-1|AAP97157.1| 292|Homo sapiens CAF2 protein.
Length = 292
Score = 95.1 bits (226), Expect = 3e-19
Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 594 SSS--GHLYGLGAPFSVNVNNFQD 529
+ G LYGLG + N D
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVD 275
>AF053318-1|AAD02685.1| 292|Homo sapiens CCR4-associated factor 1
protein.
Length = 292
Score = 95.1 bits (226), Expect = 3e-19
Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIE 595
+YDV YLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA F+D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 594 SSS--GHLYGLGAPFSVNVNNFQD 529
+ G LYGLG + N D
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVD 275
>BT006685-1|AAP35331.1| 246|Homo sapiens CCR4-NOT transcription
complex, subunit 7 protein.
Length = 246
Score = 83.8 bits (198), Expect = 6e-16
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMA 637
+YDV YLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTG A
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGNA 237
>BC007315-1|AAH07315.1| 246|Homo sapiens CNOT7 protein protein.
Length = 246
Score = 83.8 bits (198), Expect = 6e-16
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = -3
Query: 774 VYDVXYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMA 637
+YDV YLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTG A
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGNA 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,487,969
Number of Sequences: 237096
Number of extensions: 1828446
Number of successful extensions: 2428
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2424
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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