Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_J12
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 57 2e-08
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 57 2e-08
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 28 8.6
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 28 8.6
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 28 8.6
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 28 8.6
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 28 8.6
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 28 8.6
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Frame = -3
Query: 735 LKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIESSS----GHLYGL 568
LKGGLQEVADQL+++R G +HQAGSD+ LT F DN + GH++GL
Sbjct: 220 LKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGL 279
Query: 567 GAPFSV 550
G+ S+
Sbjct: 280 GSSLSL 285
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Frame = -3
Query: 735 LKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIESSS----GHLYGL 568
LKGGLQEVADQL+++R G +HQAGSD+ LT F DN + GH++GL
Sbjct: 220 LKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGL 279
Query: 567 GAPFSV 550
G+ S+
Sbjct: 280 GSSLSL 285
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 IYLDSRLTRLYFTIYCNCIRICPFIL*GE-ICVVAVNVWIHTQILQIKRNFRFRHCLGSY 542
IYL++++ F + + ++ P+ + G I +V +W+ ++ IK++F+ CLGSY
Sbjct: 272 IYLNNQIV---FGFFNSEPKLLPYFIAGYGIPLVHTMLWL--LVVLIKKDFKVERCLGSY 326
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 IYLDSRLTRLYFTIYCNCIRICPFIL*GE-ICVVAVNVWIHTQILQIKRNFRFRHCLGSY 542
IYL++++ F + + ++ P+ + G I +V +W+ ++ IK++F+ CLGSY
Sbjct: 262 IYLNNQIV---FGFFNSEPKLLPYFIAGYGIPLVHTMLWL--LVVLIKKDFKVERCLGSY 316
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 IYLDSRLTRLYFTIYCNCIRICPFIL*GE-ICVVAVNVWIHTQILQIKRNFRFRHCLGSY 542
IYL++++ F + + ++ P+ + G I +V +W+ ++ IK++F+ CLGSY
Sbjct: 272 IYLNNQIV---FGFFNSEPKLLPYFIAGYGIPLVHTMLWL--LVVLIKKDFKVERCLGSY 326
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 IYLDSRLTRLYFTIYCNCIRICPFIL*GE-ICVVAVNVWIHTQILQIKRNFRFRHCLGSY 542
IYL++++ F + + ++ P+ + G I +V +W+ ++ IK++F+ CLGSY
Sbjct: 272 IYLNNQIV---FGFFNSEPKLLPYFIAGYGIPLVHTMLWL--LVVLIKKDFKVERCLGSY 326
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 IYLDSRLTRLYFTIYCNCIRICPFIL*GE-ICVVAVNVWIHTQILQIKRNFRFRHCLGSY 542
IYL++++ F + + ++ P+ + G I +V +W+ ++ IK++F+ CLGSY
Sbjct: 272 IYLNNQIV---FGFFNSEPKLLPYFIAGYGIPLVHTMLWL--LVVLIKKDFKVERCLGSY 326
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 IYLDSRLTRLYFTIYCNCIRICPFIL*GE-ICVVAVNVWIHTQILQIKRNFRFRHCLGSY 542
IYL++++ F + + ++ P+ + G I +V +W+ ++ IK++F+ CLGSY
Sbjct: 262 IYLNNQIV---FGFFNSEPKLLPYFIAGYGIPLVHTMLWL--LVVLIKKDFKVERCLGSY 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,433
Number of Sequences: 27780
Number of extensions: 320868
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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