Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J12
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   7.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.3  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.7  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 517 RKFLLICRICVCIQTFT 467
           + F++I  ICVC+   T
Sbjct: 2   KTFVIISAICVCVGALT 18


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 136 HILELNYIDKNLIYYNILV 192
           ++ E+NY+ ++L   N+LV
Sbjct: 750 YLAEMNYVHRDLAARNVLV 768


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 190 LRYCNR*DFYQYNLILKCV 134
           +R   R  FY +NLIL C+
Sbjct: 207 IRLRRRPMFYVFNLILPCI 225


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 517 RKFLLICRICVCIQTFT 467
           + F++I  ICVC+   T
Sbjct: 2   KTFVIIFAICVCVGAMT 18


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 617 YFLTTILKVQVGIYTVLV 564
           Y +TTIL   VGI  VL+
Sbjct: 142 YTVTTILAAIVGIVMVLI 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,659
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)