Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J06
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0300 + 15494936-15495213,15495940-15496279                       28   6.2  
08_01_0966 + 9751198-9751530,9752182-9752337,9753145-9753240,975...    27   8.2  
06_03_0549 - 22016553-22016573,22016972-22017369,22018059-22018815     27   8.2  

>08_02_0300 + 15494936-15495213,15495940-15496279
          Length = 205

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 26  TRWVLGNLASKVCITDYHP*ASPWASPCS 112
           +R VLG+LA K C T ++    PW + C+
Sbjct: 150 SRRVLGDLAVKDCSTHWYGHLLPWGAGCT 178


>08_01_0966 +
           9751198-9751530,9752182-9752337,9753145-9753240,
           9753599-9753719,9754027-9754196
          Length = 291

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 226 RTLPPSPPARTVVSQXMTQSHPAQIXP 146
           R LPP+PP  +  S      HPA   P
Sbjct: 6   RLLPPTPPPHSAASPPARHRHPALAAP 32


>06_03_0549 - 22016553-22016573,22016972-22017369,22018059-22018815
          Length = 391

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
 Frame = +2

Query: 29  RWVLGNLASKVCITDY------HP*ASPWASPCSI 115
           +WV  N  S  C   Y      HP  +PW  PCS+
Sbjct: 219 KWVALNRCSTKCSKGYKKLLMSHPKRNPWPPPCSV 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,506,939
Number of Sequences: 37544
Number of extensions: 135918
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)