Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_J05
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 57 3e-09
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 45 1e-05
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 43 4e-05
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.51
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 2.7
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 6.3
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 25 8.4
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 56.8 bits (131), Expect = 3e-09
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = -1
Query: 633 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPE 454
A+K KD E+ E K++DK+ NG + ELTH L +LGE+L EVA++ ++
Sbjct: 75 ARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA--DT 132
Query: 453 DDDGMIPYAAFLKKV 409
D DG+I Y F + +
Sbjct: 133 DGDGVINYEEFSRVI 147
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -1
Query: 600 DFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAF 421
+F E L+D++++G + EL + +LG+ +E+ ++ + D +G I + F
Sbjct: 13 EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEV--DADGNGTIDFTEF 70
Query: 420 L 418
L
Sbjct: 71 L 71
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/84 (29%), Positives = 47/84 (55%)
Frame = -1
Query: 654 FLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVT 475
FL + ++ G E+F++ +++DK+ G++ EL + L +LGEKL + E+ E+
Sbjct: 60 FLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELL 119
Query: 474 KDCMDPEDDDGMIPYAAFLKKVMA 403
K DGM+ Y F++ ++A
Sbjct: 120 KGV---PVKDGMVNYHDFVQMILA 140
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/77 (27%), Positives = 46/77 (59%)
Frame = -1
Query: 633 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPE 454
+ K ++ + E++++ +++DK+ +G + A+ + LGEKL D+EV + ++ DP
Sbjct: 68 SNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEA-DP- 125
Query: 453 DDDGMIPYAAFLKKVMA 403
+ G Y F++++MA
Sbjct: 126 TNSGSFDYYDFVQRIMA 142
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -1
Query: 603 EDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAA 424
++ E LYD +++GL+ + + L +LG + D+E+A+++ + D D+ + + +
Sbjct: 9 DEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVS 68
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = -1
Query: 642 YSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKD 469
Y+ + + + +D E KL+D +++ + EL + ALG + SEV ++ +D
Sbjct: 24 YAPLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRD 81
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = -1
Query: 630 KKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPED 451
+K ++ E+ +L+D +E G + L L E +DD E+ + ++ D
Sbjct: 101 EKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEF--DLD 158
Query: 450 DDGMIPYAAFLKKVM 406
DG I F+ +M
Sbjct: 159 QDGEINEQEFIAIMM 173
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 250 APPEELSPPRALPAPVPQSRASVF*GPSHRT 342
APP PP A P P+P S A P R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 98 CKTHVVRVFKLLFIYLLSTFIMTKI 24
CK+H R+ K LFI LSTF T I
Sbjct: 410 CKSHFERIKKTLFIDGLSTFSDTLI 434
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 190 QTPFLYEQHNINCFVQLSTFDCTY*SKIKYTVKHTLCVFLNY 65
+ PF+ H + FVQL+T+ T S I ++K L VF Y
Sbjct: 550 ENPFIQFDHIDSSFVQLATYIDT--SMIPSSLKPYLSVFAKY 589
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 516 LGEKLDDSEVAEVTKDCMDPED 451
L EK+ D + + DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 138 ESCTKQLILCCSYKKGVCPYLRCYTGCRR 224
ESC K+ CC KK C GC R
Sbjct: 78 ESCEKKKPKCCEKKKPKCCESEQNNGCGR 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,525
Number of Sequences: 5004
Number of extensions: 48779
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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