Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_J04
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 390 e-109
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 388 e-109
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 163 3e-41
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 94 2e-20
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.23
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.94
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 6.6
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 6.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 390 bits (960), Expect = e-109
Identities = 175/224 (78%), Positives = 197/224 (87%)
Frame = -3
Query: 752 DIERPTYTNLNRLIGQIVSSITAXLRXDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 573
DIERPTY NLNRLI Q+VSSITA LR G+ NVDL EFQTNLVPYPRIHFPLVTY+P++S
Sbjct: 222 DIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
Query: 572 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 393
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK+
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341
Query: 392 KRTIQXVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKXDL 213
+RTIQ VDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHK DL
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDL 401
Query: 212 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSAE 81
MY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS +
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMD 445
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 388 bits (955), Expect = e-109
Identities = 175/224 (78%), Positives = 196/224 (87%)
Frame = -3
Query: 752 DIERPTYTNLNRLIGQIVSSITAXLRXDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 573
DIERP+Y NLNRLI Q+VSSITA LR +G+ NVDL EFQTNLVPYPRIHFPLVTYAP++S
Sbjct: 218 DIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277
Query: 572 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 393
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337
Query: 392 KRTIQXVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKXDL 213
KRTIQ VDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHK DL
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397
Query: 212 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSAE 81
MY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS E
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSME 441
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 163 bits (395), Expect = 3e-41
Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 3/226 (1%)
Frame = -3
Query: 749 IERPTYTNLNRLIGQIVSSITAXLRXDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 570
I+ P+Y +LN L+ +++ +T R G N DL + N+VP+PR+HF +V +AP+ +
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276
Query: 569 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 390
+ + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 389 RTIQXVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKXDLM 210
+ V+W P + PP DL + + + N+T+I E + RL + M
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAM 388
Query: 209 YAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMDSAE 81
+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D +
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGD 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 93.9 bits (223), Expect = 2e-20
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 7/221 (3%)
Frame = -3
Query: 746 ERPTYTNLNRLIGQIVSSITAXLRXDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVIS-- 573
+ PT+ N+L+ ++S+ T LR G N DL +L+P PR HF L +Y P +
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ 280
Query: 572 -AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATI 399
E + +V ++ P NQMV +P + +++ + +G+ P DV+ ++ I
Sbjct: 281 VEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340
Query: 398 KTKRTIQXVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKX 219
+ +R + W P +V ++ + P + ++ + ML+N T+IA + R +
Sbjct: 341 RERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQY 395
Query: 218 DLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 105
D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 396 DRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.23
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -1
Query: 577 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTXYPRM*TRPSLPS 398
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 397 KPSVLSNXSTGVQPVSRSVSTTSHPPWCP 311
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +3
Query: 405 SDGRVHILGYXVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 584
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 585 RVRDQWEVDTGVR 623
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 533 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 408
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 646 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 500
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 583 QSSLPRRPTMNSFPSPRSQTHASSPPTR 500
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 649 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 509
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 412 PSLPSKPSVLSNXST--GVQPVSRSVSTTSHPPW 317
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -1
Query: 622 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 470
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 418 TRPSLPS-KPSVLSNXSTGVQPVSRSVSTTSHP 323
T P PS PS+ S+ T V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPT-VKPFSSQNSTTSNP 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,849
Number of Sequences: 5004
Number of extensions: 63051
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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