Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J03
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.3  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 517 RTAYVVGSLALKTYF*TYHYKIQNTNHQQFNSCK 618
           R   ++ SL+ KT     +YK    N+   N+CK
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 517 RTAYVVGSLALKTYF*TYHYKIQNTNHQQFNSCK 618
           R   ++ SL+ KT     +YK    N+   N+CK
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 517 RTAYVVGSLALKTYF*TYHYKIQNTNHQQFNSCK 618
           R   ++ SL+ KT     +YK    N+   N+CK
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 517 RTAYVVGSLALKTYF*TYHYKIQNTNHQQFNSCK 618
           R   ++ SL+ +T     +YK    N+   N+CK
Sbjct: 77  REPKIISSLSNRTIHNNNNYKYNYNNNNYNNNCK 110


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 575 IRYKIQITSNLIPVNTSNGLQ 637
           +R KI+     IPV +S G+Q
Sbjct: 399 LRTKIESGEGTIPVKSSEGIQ 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,333
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)