Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J02
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    24   1.1  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    22   4.4  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   5.8  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 446 DLRVVLCRGGSDDGSHK 496
           DL+++L  GG ++GS+K
Sbjct: 92  DLKIILSMGGWNEGSYK 108


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  ADILKTQ-QIVKKNVQKNMAVSIKLITSNKRMWW 114
           AD L+T      +  Q      I+ +  NKR WW
Sbjct: 66  ADALQTSCSKCSQRQQDGSRTIIRYLIKNKRDWW 99


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  ADILKTQQIVKKNVQKNMAVSI-KLITSNKRMWW 114
           AD L+T        QK+ + +I + +  NKR WW
Sbjct: 66  ADALQTSCSKCSQRQKDGSRTIIRYLIKNKRDWW 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,820
Number of Sequences: 336
Number of extensions: 2465
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)