Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J01
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    28   1.6  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   5.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   5.0  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.6  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   8.7  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.7  

>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 405 RNRQGGGTYQCGLTRGPTTSKNIQD--TFISTCQNRCSEY 518
           R ++     Q GL   PT  + + +  TF+ TC + C EY
Sbjct: 76  REKEREVAIQNGLIDDPTKPRQLDEAVTFVGTCPDMCPEY 115


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
 Frame = +2

Query: 230 FYYLDGWTSSAHLVF----SGYWSP 292
           +Y+LDGW    HL +    S  W P
Sbjct: 395 WYFLDGWIDGVHLTYLITLSSLWRP 419


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 426 YHHPAYFCCEAVMSFGLKGGAAVVTILRLELISQGG 319
           +  P+ F  E V+   L GG AVV +  LE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV-TLEAIKQSG 121


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 144  VNNLTNFKILILYTI*RHAFNILHDFLIFFIT*MGGRAQPTWCLVVIGA 290
            V    N K + +Y +    F + +    F++   G R++PTW +V  G+
Sbjct: 1197 VEKKENVKPIAIYRMNGGEFLLCYSQFAFYVNRDGWRSRPTWFVVWEGS 1245


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 167 NLDTLYDLKARIQHPS*FFNFFYYLDGWTSSAHL 268
           +L T+   +A + +   F+NF+Y  D W S  +L
Sbjct: 205 SLGTIESTRAEVDN---FYNFWYNFDSWRSFEYL 235


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 325 LRYKF*SQYSYNGCPTLQTKTHYCFTAEIGRVVVPTSADSQEVLPLVRTY 474
           L Y F + +      T+     +CF+  +G +  P    +Q+ LPL   Y
Sbjct: 226 LVYHFHNSHLGMDSSTVSNLKRFCFSESLGHIFAPLRFQNQQ-LPLQHVY 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,637
Number of Sequences: 5004
Number of extensions: 51774
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)