Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_J01
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81072-6|CAB03017.2|  196|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 429 YQCGLTRGPTTSKNIQDTFISTCQNRCSEYTA-FSYDIVQSMTLPA 563
           +QC  T  PTT+ +   + I+T Q   SEY++  S D++ + T P+
Sbjct: 237 FQC-TTDDPTTTVSYSTSTITTPQEDDSEYSSTTSADVISTTTTPS 281


>Z81072-6|CAB03017.2|  196|Caenorhabditis elegans Hypothetical
           protein F30A10.9 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 415 RVVVPTSADSQEVLPLVRTYKIHSFLHVRIGVQNIPLFHMI 537
           RV+     D QE L LVR  KI S + ++   Q  P FH+I
Sbjct: 30  RVIRTPKVDEQE-LKLVRAPKISSAMFMKYNTQLGPPFHVI 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,748
Number of Sequences: 27780
Number of extensions: 293925
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)